Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 RNU6-1279P-201ENST00000383917 103 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 MIR199A2-201ENST00000385289 110 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 SAR1AP2-201ENST00000392696 594 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AC007098.1-201ENST00000420122 367 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 Z98949.2-201ENST00000440996 144 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AL583843.1-201ENST00000456070 346 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 HMGN2P13-201ENST00000476476 274 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 RNU6-1143P-201ENST00000516125 104 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AC025755.1-201ENST00000521306 278 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AC022695.1-201ENST00000522089 237 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AC004584.2-201ENST00000570407 410 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 MIR5696-201ENST00000578474 85 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AC008962.1-201ENST00000605729 304 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AC011373.1-201ENST00000607270 237 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AC006023.2-201ENST00000609916 167 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 MIR3651-201ENST00000630427 90 ntBASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 RNA5SP51-201ENST00000364750 119 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 MIR521-1-201ENST00000384902 87 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 RNU6-700P-201ENST00000391043 107 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 SNORA40C-201ENST00000391285 128 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 RPL21P1-201ENST00000399532 476 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 AC092573.2-201ENST00000434546 243 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 CHEK2P4-201ENST00000450340 246 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 AC133473.1-201ENST00000455173 299 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 RPL23AP45-201ENST00000476406 468 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 RPS29P2-201ENST00000479278 136 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 AC006517.1-201ENST00000480485 328 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 RNU6-408P-201ENST00000515910 100 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 AC107016.1-201ENST00000550463 337 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 AC006600.1-201ENST00000572529 153 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 AC008121.1-201ENST00000603244 268 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 U6.104-201ENST00000637979 90 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 MTND5P9-201ENST00000503854 1755 ntBASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC87Q9NVE4 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC87Q9NVE4 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC87Q9NVE4 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC87Q9NVE4 AC008568.2-201ENST00000623862 2313 ntBASIC4.9□□□□□ -1.62
CCDC87Q9NVE4 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC87Q9NVE4 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC87Q9NVE4 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.9□□□□□ -1.62
CCDC87Q9NVE4 RNU6-379P-201ENST00000363813 104 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 RNU6-595P-201ENST00000363944 107 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 RNU4-50P-201ENST00000364361 141 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 SNORA7.2-201ENST00000364446 145 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 Y_RNA.288-201ENST00000364854 92 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 RNA5SP267-201ENST00000364893 126 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 RNU6-827P-201ENST00000365553 106 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 Y_RNA.533-201ENST00000384596 114 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 MIR10A-201ENST00000385043 110 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 AL356968.1-201ENST00000416622 474 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 TOMM22P1-201ENST00000418578 312 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 AL117339.3-201ENST00000418733 162 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 PGBD4P6-201ENST00000421501 610 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 AC007919.1-201ENST00000429380 217 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 USP9YP16-201ENST00000430287 407 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 AC087650.1-201ENST00000431445 468 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 DYNLT3P2-201ENST00000442517 295 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 USP9YP23-201ENST00000455085 407 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 RPL32P34-201ENST00000486380 400 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 AC104564.1-201ENST00000493028 407 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 AF186190.1-201ENST00000517470 480 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 IGLV3-26-201ENST00000520756 302 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 AP005902.1-201ENST00000521358 186 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 MIR5701-3-201ENST00000578890 82 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 MIR5701-1-201ENST00000585138 82 ntBASIC4.9□□□□□ -1.63
CCDC87Q9NVE4 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 139.7 ms