Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 ELOCP14-201ENST00000428070 331 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AC000111.3-201ENST00000433478 193 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 ELOCP7-201ENST00000439968 331 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AC079781.2-201ENST00000446424 169 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AL353705.4-201ENST00000449661 238 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 RPS29P25-201ENST00000481709 171 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AC079382.1-201ENST00000493346 557 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 RNU2-10P-201ENST00000516375 211 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AP006587.4-201ENST00000526053 529 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AC011979.2-201ENST00000527568 352 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 OR5B19P-201ENST00000531766 928 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AL133241.1-201ENST00000556832 487 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AC025678.1-201ENST00000567861 338 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 DPPA3P3-201ENST00000603842 430 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 RBM11P1-201ENST00000604951 799 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AL627309.6-201ENST00000606857 840 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AC002064.3-201ENST00000623448 346 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 MIR1321-201ENST00000637766 79 ntBASIC2.75□□□□□ -1.97
UPF3AQ9H1J1 AP006437.1-201ENST00000641440 3685 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC007336.1-201ENST00000576365 3828 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 Y_RNA.38-201ENST00000362617 102 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 RNU6-534P-201ENST00000364877 106 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 RNU1-73P-201ENST00000383971 164 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 RNU6-701P-201ENST00000384059 107 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AL591416.1-201ENST00000404015 867 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC007064.1-201ENST00000412238 351 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 USP9YP6-201ENST00000413550 854 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 DPH3P2-201ENST00000422618 250 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 MTCO1P20-201ENST00000425366 358 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 RPL7P54-201ENST00000438336 674 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC103975.1-201ENST00000482506 483 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 RPL36AP51-201ENST00000487216 318 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 MLLT10P2-201ENST00000506434 249 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC009901.1-201ENST00000506703 541 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 SNORA40.12-201ENST00000516329 111 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 RNU7-51P-201ENST00000516560 62 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 RNU6-1092P-201ENST00000516955 87 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 HMGN1P28-201ENST00000521340 364 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AL157687.1-201ENST00000554853 619 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 SNORA59B-202ENST00000578183 701 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AP000907.4-201ENST00000604143 237 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC007363.1-201ENST00000604736 620 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC010133.1-201ENST00000615809 842 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 AC005609.4-201ENST00000625071 447 ntBASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.74□□□□□ -1.97
UPF3AQ9H1J1 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 RNU6-960P-201ENST00000364056 120 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 Y_RNA.402-201ENST00000383972 102 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 SNORA24.1-201ENST00000384401 135 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 NDUFS5P1-201ENST00000405668 289 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 TXNP7-201ENST00000406296 293 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 MIR1277-201ENST00000408536 78 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AC016691.1-201ENST00000441321 413 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AC020550.1-201ENST00000447385 163 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 NFU1P2-201ENST00000448700 469 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AC027673.1-201ENST00000456245 405 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 Y_RNA.638-201ENST00000459374 113 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 MRPS17P3-201ENST00000465453 385 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AC083798.1-201ENST00000472671 131 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 SNORA31.8-201ENST00000516327 108 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 NRON-201ENST00000517270 370 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 HSPE1P20-201ENST00000538133 289 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms