Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CLRN3Q8NCR9 MAPK10-322ENST00000641485 4530 ntBASIC3.47□□□□□ -1.85
CLRN3Q8NCR9 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.85
CLRN3Q8NCR9 Y_RNA.39-201ENST00000362620 98 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 RN7SKP162-201ENST00000363605 345 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 Y_RNA.314-201ENST00000365114 102 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 Y_RNA.364-201ENST00000365532 101 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 RNY1P14-201ENST00000384426 108 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 MIR223-201ENST00000385204 110 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 MTHFD2P2-201ENST00000407725 247 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 RNU6-1156P-201ENST00000410365 100 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 MIR1911-201ENST00000410783 80 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 PPIAP20-201ENST00000449839 135 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 AC091685.2-201ENST00000454924 864 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 RN7SL30P-201ENST00000488416 306 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 AC104564.1-201ENST00000493028 407 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 RPS27P26-201ENST00000494583 239 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 RN7SKP122-201ENST00000515923 296 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 RNU6-327P-201ENST00000516270 127 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 GNAI2P1-201ENST00000541815 315 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 GNRHR2P1-201ENST00000555315 631 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 AC060766.3-201ENST00000591442 263 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 SUMO2P15-201ENST00000604285 278 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 AL360085.1-201ENST00000604713 532 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 AC100827.5-201ENST00000615883 426 ntBASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC3.46□□□□□ -1.86
CLRN3Q8NCR9 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC091564.4-201ENST00000533934 2194 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AP000560.1-201ENST00000624150 1937 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 RNA5SP183-201ENST00000362452 119 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 SNORA17.1-201ENST00000362945 126 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 Y_RNA.80-201ENST00000362996 102 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 RNU4-9P-201ENST00000364951 139 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 RNU6-1286P-201ENST00000383871 107 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 Y_RNA.496-201ENST00000384444 101 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 EI24P2-201ENST00000397776 1076 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 RN7SKP61-201ENST00000410642 295 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC108032.1-201ENST00000416706 207 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AL645608.4-201ENST00000423619 154 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AL591419.1-201ENST00000427423 339 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC078809.1-201ENST00000427601 140 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 OSTCP8-201ENST00000445117 448 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 RPL39P29-201ENST00000447779 157 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 GSTA11P-201ENST00000452866 669 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 ISCUP1-201ENST00000454451 448 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC144568.1-201ENST00000520139 137 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 IGLV2-28-201ENST00000520681 304 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC115990.1-201ENST00000526957 301 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 HSPE1P4-201ENST00000550617 308 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC007375.1-201ENST00000554513 578 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC104581.2-201ENST00000572227 430 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 MIR3176-201ENST00000582210 90 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC012493.2-201ENST00000595083 291 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC092447.9-201ENST00000603395 144 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 FAM27D1-201ENST00000612308 341 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 uc_338.14-201ENST00000613162 166 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 MIR8058-201ENST00000615737 89 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 AC007485.1-201ENST00000616755 206 ntBASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CLRN3Q8NCR9 ZNF826P-207ENST00000622273 1910 ntBASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 AC092268.1-201ENST00000342691 405 ntBASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 Y_RNA.158-201ENST00000363651 101 ntBASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 RNU6-738P-201ENST00000384531 106 ntBASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 U3.22-201ENST00000391120 215 ntBASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 MRPL42P3-201ENST00000401492 326 ntBASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 AC138623.1-201ENST00000418060 216 ntBASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 MTND2P23-201ENST00000422990 651 ntBASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 RN7SL172P-201ENST00000460535 303 ntBASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 SNRPGP7-201ENST00000469016 106 ntBASIC3.44□□□□□ -1.86
CLRN3Q8NCR9 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms