Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL158211.4-201ENST00000606988 584 ntBASIC1.06□□□□□ -2.24
USP54Q70EL1 AC091925.1-201ENST00000623204 462 ntBASIC1.06□□□□□ -2.24
USP54Q70EL1 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
USP54Q70EL1 DBF4P1-201ENST00000412976 1892 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.05□□□□□ -2.24
USP54Q70EL1 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
USP54Q70EL1 AL589743.1-201ENST00000551932 2712 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 RNU5E-1-201ENST00000362477 120 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 Y_RNA.115-201ENST00000363272 98 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 RNA5SP62-201ENST00000363457 110 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 MIR95-201ENST00000385072 81 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 AL109755.1-201ENST00000401791 649 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.05□□□□□ -2.24
USP54Q70EL1 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.05□□□□□ -2.24
USP54Q70EL1 KATNBL1P6-201ENST00000453433 915 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 AL441985.1-201ENST00000457727 251 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 RPL36AP48-201ENST00000485521 314 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 AC118282.2-201ENST00000508739 374 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 DUXAP1-201ENST00000556632 463 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.05□□□□□ -2.24
USP54Q70EL1 BNIP3P23-201ENST00000599655 511 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 AL355802.4-201ENST00000607635 548 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 AC239868.4-201ENST00000608318 671 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 AC099842.1-201ENST00000619919 596 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 MTND5P11-201ENST00000511037 1812 ntBASIC1.05□□□□□ -2.24
USP54Q70EL1 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
USP54Q70EL1 SNORD51.1-201ENST00000365405 77 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.04□□□□□ -2.24
USP54Q70EL1 RSU1P2-202ENST00000437884 485 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 MTCO1P53-201ENST00000441633 699 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 RPS27AP10-201ENST00000496103 208 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 BOLA3P3-201ENST00000505182 232 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 SNORA44.1-201ENST00000517031 108 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.04□□□□□ -2.24
USP54Q70EL1 NAP1L1P1-201ENST00000524793 1063 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AC090079.2-201ENST00000575289 768 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC1.04□□□□□ -2.24
USP54Q70EL1 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC1.04□□□□□ -2.24
USP54Q70EL1 AC009233.1-201ENST00000616477 371 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AC079416.3-201ENST00000624479 549 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AL356473.1-201ENST00000406203 1408 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
USP54Q70EL1 ZNF736P10Y-201ENST00000403990 1110 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AC097463.2-201ENST00000421074 142 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.04□□□□□ -2.24
USP54Q70EL1 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC1.04□□□□□ -2.24
USP54Q70EL1 ZNF736P11Y-201ENST00000442535 1213 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC1.04□□□□□ -2.24
USP54Q70EL1 HGF-207ENST00000453018 721 ntTSL 3 BASIC1.04□□□□□ -2.24
USP54Q70EL1 CYP2C59P-201ENST00000457790 269 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AC098862.1-201ENST00000504991 413 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.04□□□□□ -2.24
USP54Q70EL1 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC1.04□□□□□ -2.24
USP54Q70EL1 ADAM3B-201ENST00000569937 840 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AC096772.1-201ENST00000609146 564 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC1.04□□□□□ -2.24
USP54Q70EL1 U2.21-201ENST00000637295 81 ntBASIC1.04□□□□□ -2.24
USP54Q70EL1 AL139397.2-201ENST00000404529 772 ntBASIC1.03□□□□□ -2.24
USP54Q70EL1 RNA5SP193-201ENST00000410353 107 ntBASIC1.03□□□□□ -2.24
USP54Q70EL1 AC007435.1-201ENST00000421086 415 ntBASIC1.03□□□□□ -2.24
USP54Q70EL1 AC007919.1-201ENST00000429380 217 ntBASIC1.03□□□□□ -2.24
USP54Q70EL1 AC002381.1-201ENST00000447049 280 ntBASIC1.03□□□□□ -2.24
USP54Q70EL1 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
USP54Q70EL1 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC1.03□□□□□ -2.24
USP54Q70EL1 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.03□□□□□ -2.24
USP54Q70EL1 AC022254.1-201ENST00000567857 235 ntBASIC1.03□□□□□ -2.24
USP54Q70EL1 MIR4711-201ENST00000578274 70 ntBASIC1.03□□□□□ -2.24
USP54Q70EL1 AC011451.2-201ENST00000604303 598 ntBASIC1.03□□□□□ -2.24
USP54Q70EL1 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.03□□□□□ -2.24
USP54Q70EL1 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.03□□□□□ -2.24
USP54Q70EL1 RNU6-486P-201ENST00000363116 107 ntBASIC1.02□□□□□ -2.25
USP54Q70EL1 SNORA8-201ENST00000384574 139 ntBASIC1.02□□□□□ -2.25
USP54Q70EL1 MTCYBP38-201ENST00000417160 1123 ntBASIC1.02□□□□□ -2.25
USP54Q70EL1 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC1.02□□□□□ -2.25
USP54Q70EL1 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC1.02□□□□□ -2.25
USP54Q70EL1 MTCYBP16-201ENST00000509187 1129 ntBASIC1.02□□□□□ -2.25
USP54Q70EL1 AL356432.3-201ENST00000568952 465 ntBASIC1.02□□□□□ -2.25
USP54Q70EL1 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.02□□□□□ -2.25
USP54Q70EL1 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.02□□□□□ -2.25
USP54Q70EL1 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC1.02□□□□□ -2.25
USP54Q70EL1 RMST_10.1-201ENST00000616309 154 ntBASIC1.02□□□□□ -2.25
USP54Q70EL1 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC1.02□□□□□ -2.25
USP54Q70EL1 AL118508.4-201ENST00000624142 1176 ntBASIC1.02□□□□□ -2.25
USP54Q70EL1 AC009541.1-201ENST00000438279 2662 ntBASIC1.02□□□□□ -2.25
USP54Q70EL1 MTND5P9-201ENST00000503854 1755 ntBASIC1.02□□□□□ -2.25
USP54Q70EL1 RNU6-492P-201ENST00000363035 104 ntBASIC1.01□□□□□ -2.25
USP54Q70EL1 RNU11-3P-201ENST00000391111 133 ntBASIC1.01□□□□□ -2.25
USP54Q70EL1 RNU2-28P-201ENST00000410457 189 ntBASIC1.01□□□□□ -2.25
USP54Q70EL1 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC1.01□□□□□ -2.25
USP54Q70EL1 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.01□□□□□ -2.25
USP54Q70EL1 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC1.01□□□□□ -2.25
USP54Q70EL1 SNRPEP9-201ENST00000436794 238 ntBASIC1.01□□□□□ -2.25
USP54Q70EL1 AC104806.1-201ENST00000508720 308 ntBASIC1.01□□□□□ -2.25
USP54Q70EL1 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.01□□□□□ -2.25
USP54Q70EL1 RNU6-362P-201ENST00000516736 90 ntBASIC1.01□□□□□ -2.25
USP54Q70EL1 RNU6-528P-201ENST00000516926 100 ntBASIC1.01□□□□□ -2.25
USP54Q70EL1 NRON-201ENST00000517270 370 ntBASIC1.01□□□□□ -2.25
USP54Q70EL1 MTCYBP22-201ENST00000603788 447 ntBASIC1.01□□□□□ -2.25
USP54Q70EL1 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.01□□□□□ -2.25
USP54Q70EL1 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms