Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS53Q5VIR6 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS53Q5VIR6 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS53Q5VIR6 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
VPS53Q5VIR6 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS53Q5VIR6 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 Y_RNA.399-201ENST00000383955 105 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 RNU6-1013P-201ENST00000384180 107 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 SNORA46-201ENST00000384762 135 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 RPL21P3-201ENST00000395517 478 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 RPL7P10-201ENST00000417407 739 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 RPS15AP27-201ENST00000449183 343 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AC233279.1-201ENST00000455300 423 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 SCARNA18-201ENST00000459004 134 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AC146507.2-201ENST00000460608 476 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 MTCO1P29-201ENST00000496868 288 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AC006445.2-201ENST00000510061 472 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 RNU6-1038P-201ENST00000516516 104 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 CASP1P1-201ENST00000526345 212 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AC005951.2-201ENST00000576282 495 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 MIR3200-201ENST00000580767 85 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 MIR3609-201ENST00000582661 80 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AC113139.1-201ENST00000605049 239 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AL670379.4-201ENST00000605279 254 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 AC103705.1-201ENST00000619013 241 ntBASIC3.73□□□□□ -1.81
VPS53Q5VIR6 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS53Q5VIR6 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS53Q5VIR6 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS53Q5VIR6 SNORD113-7-201ENST00000363762 77 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 Y_RNA.301-201ENST00000364990 103 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 Y_RNA.431-201ENST00000384086 102 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 SNORA9-201ENST00000384215 133 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 EIF4E2P1-201ENST00000393781 255 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS53Q5VIR6 SAR1AP4-201ENST00000429225 591 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS53Q5VIR6 NDUFA5P4-201ENST00000436704 385 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS53Q5VIR6 AC083904.1-201ENST00000487828 231 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 TRBVA-201ENST00000498804 316 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS53Q5VIR6 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS53Q5VIR6 AC008885.1-201ENST00000514930 301 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 Y_RNA.689-201ENST00000516589 107 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 Y_RNA.701-201ENST00000516812 110 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 HMGB1P14-201ENST00000557424 591 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 CTHRC1P1-201ENST00000605383 469 ntBASIC3.72□□□□□ -1.81
VPS53Q5VIR6 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS53Q5VIR6 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS53Q5VIR6 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.72□□□□□ -1.81
VPS53Q5VIR6 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS53Q5VIR6 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS53Q5VIR6 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.81
VPS53Q5VIR6 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS53Q5VIR6 RNU1-101P-201ENST00000391171 127 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 AC080125.1-201ENST00000414888 684 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS53Q5VIR6 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS53Q5VIR6 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS53Q5VIR6 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS53Q5VIR6 RPL21P93-201ENST00000480465 489 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS53Q5VIR6 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS53Q5VIR6 RNU6-189P-201ENST00000516120 101 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 AC090136.1-201ENST00000520009 240 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS53Q5VIR6 MTCO3P23-201ENST00000561363 289 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS53Q5VIR6 AC106782.4-201ENST00000568264 210 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS53Q5VIR6 AC092747.3-201ENST00000603769 301 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 DPPA3P3-201ENST00000603842 430 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 HSPE1P7-201ENST00000604681 321 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 AC016727.1-205ENST00000605437 569 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 Z82243.1-201ENST00000609432 473 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 AL160413.1-201ENST00000622780 310 ntBASIC3.71□□□□□ -1.82
VPS53Q5VIR6 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS53Q5VIR6 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS53Q5VIR6 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS53Q5VIR6 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 MTND5P27-201ENST00000428871 1720 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS53Q5VIR6 AC073325.2-201ENST00000339545 159 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 Y_RNA.384-201ENST00000383909 102 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 AL356057.2-201ENST00000403318 432 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 AL513331.1-201ENST00000411908 397 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms