Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.05□□□□□ -2.4
TFF3Q07654 RNU1-58P-201ENST00000362413 163 ntBASIC0.05□□□□□ -2.4
TFF3Q07654 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.05□□□□□ -2.4
TFF3Q07654 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC0.05□□□□□ -2.4
TFF3Q07654 AC067940.1-201ENST00000458411 300 ntBASIC0.05□□□□□ -2.4
TFF3Q07654 AL163195.1-201ENST00000496941 348 ntBASIC0.05□□□□□ -2.4
TFF3Q07654 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.05□□□□□ -2.4
TFF3Q07654 AC073111.2-201ENST00000605657 1075 ntBASIC0.05□□□□□ -2.4
TFF3Q07654 AL391834.1-201ENST00000609609 560 ntBASIC0.05□□□□□ -2.4
TFF3Q07654 MIR8065-201ENST00000620577 100 ntBASIC0.05□□□□□ -2.4
TFF3Q07654 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC0.05□□□□□ -2.4
TFF3Q07654 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.04□□□□□ -2.4
TFF3Q07654 Y_RNA.274-201ENST00000364714 101 ntBASIC0.04□□□□□ -2.4
TFF3Q07654 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC0.04□□□□□ -2.4
TFF3Q07654 RNU6-420P-201ENST00000458780 107 ntBASIC0.04□□□□□ -2.4
TFF3Q07654 snoU13.7-201ENST00000459220 104 ntBASIC0.04□□□□□ -2.4
TFF3Q07654 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.04□□□□□ -2.4
TFF3Q07654 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC0.04□□□□□ -2.4
TFF3Q07654 ANKRD36BP2-206ENST00000575193 1245 ntBASIC0.04□□□□□ -2.4
TFF3Q07654 AC040896.1-201ENST00000613819 479 ntBASIC0.04□□□□□ -2.4
TFF3Q07654 U1.36-201ENST00000620684 176 ntBASIC0.04□□□□□ -2.4
TFF3Q07654 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.04□□□□□ -2.4
TFF3Q07654 MIR302D-201ENST00000362275 68 ntBASIC0.03□□□□□ -2.4
TFF3Q07654 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.03□□□□□ -2.4
TFF3Q07654 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.03□□□□□ -2.4
TFF3Q07654 MTCO3P4-201ENST00000419236 787 ntBASIC0.03□□□□□ -2.4
TFF3Q07654 AC139712.2-201ENST00000424302 339 ntBASIC0.03□□□□□ -2.4
TFF3Q07654 MTCO1P44-201ENST00000441935 243 ntBASIC0.03□□□□□ -2.4
TFF3Q07654 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.03□□□□□ -2.4
TFF3Q07654 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.03□□□□□ -2.4
TFF3Q07654 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC0.03□□□□□ -2.4
TFF3Q07654 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC0.03□□□□□ -2.4
TFF3Q07654 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC0.03□□□□□ -2.4
TFF3Q07654 AC005741.1-201ENST00000511094 432 ntBASIC0.03□□□□□ -2.4
TFF3Q07654 AP001893.2-201ENST00000526949 202 ntBASIC0.03□□□□□ -2.4
TFF3Q07654 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.03□□□□□ -2.4
TFF3Q07654 DUXAP1-201ENST00000556632 463 ntBASIC0.03□□□□□ -2.4
TFF3Q07654 RPL30P11-203ENST00000598995 310 ntBASIC0.03□□□□□ -2.4
TFF3Q07654 AP000254.1-201ENST00000609934 520 ntBASIC0.03□□□□□ -2.4
TFF3Q07654 AC099654.5-201ENST00000636479 350 ntBASIC0.03□□□□□ -2.4
TFF3Q07654 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC0.03□□□□□ -2.4
TFF3Q07654 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.02□□□□□ -2.41
TFF3Q07654 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC0.02□□□□□ -2.41
TFF3Q07654 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.02□□□□□ -2.41
TFF3Q07654 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC0.02□□□□□ -2.41
TFF3Q07654 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC0.02□□□□□ -2.41
TFF3Q07654 AC027119.1-201ENST00000440877 241 ntBASIC0.02□□□□□ -2.41
TFF3Q07654 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.02□□□□□ -2.41
TFF3Q07654 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.02□□□□□ -2.41
TFF3Q07654 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC0.02□□□□□ -2.41
TFF3Q07654 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.02□□□□□ -2.41
TFF3Q07654 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
TFF3Q07654 AP003973.1-201ENST00000604639 691 ntBASIC0.02□□□□□ -2.41
TFF3Q07654 BX284668.6-201ENST00000606899 438 ntBASIC0.02□□□□□ -2.41
TFF3Q07654 AC080013.4-201ENST00000607624 649 ntBASIC0.02□□□□□ -2.41
TFF3Q07654 AP001596.2-201ENST00000608410 312 ntBASIC0.02□□□□□ -2.41
TFF3Q07654 RNU6-349P-201ENST00000362402 107 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 Y_RNA.294-201ENST00000364916 102 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 RNU6-1293P-201ENST00000384077 107 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 SNORA25-201ENST00000384384 134 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 U6atac.2-201ENST00000408644 118 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 RNA5SP56-201ENST00000410277 118 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.01□□□□□ -2.41
TFF3Q07654 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.01□□□□□ -2.41
TFF3Q07654 AC025465.3-201ENST00000510570 311 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 LDHBP3-201ENST00000514909 822 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC0.01□□□□□ -2.41
TFF3Q07654 AC087897.1-201ENST00000550134 156 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 FAM60CP-201ENST00000591086 664 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 AC084373.1-201ENST00000603311 235 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 7SK.7-201ENST00000603504 247 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 AC069304.2-201ENST00000605154 435 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.01□□□□□ -2.41
TFF3Q07654 RNU6-156P-201ENST00000621869 107 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 AC008443.7-201ENST00000622195 246 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 AL049737.1-201ENST00000413920 1403 ntBASIC0.01□□□□□ -2.41
TFF3Q07654 RNU6-1331P-201ENST00000363658 106 ntBASIC0□□□□□ -2.41
TFF3Q07654 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC0□□□□□ -2.41
TFF3Q07654 MIR19B1-201ENST00000384829 87 ntBASIC0□□□□□ -2.41
TFF3Q07654 RNU6-700P-201ENST00000391043 107 ntBASIC0□□□□□ -2.41
TFF3Q07654 MIR1283-2-201ENST00000408621 87 ntBASIC0□□□□□ -2.41
TFF3Q07654 MIR1912-201ENST00000410389 80 ntBASIC0□□□□□ -2.41
TFF3Q07654 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC0□□□□□ -2.41
TFF3Q07654 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC0□□□□□ -2.41
TFF3Q07654 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0□□□□□ -2.41
TFF3Q07654 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC0□□□□□ -2.41
TFF3Q07654 MTND1P16-201ENST00000465177 898 ntBASIC0□□□□□ -2.41
TFF3Q07654 AC114786.4-201ENST00000508771 728 ntBASIC0□□□□□ -2.41
TFF3Q07654 MTCYBP16-201ENST00000509187 1129 ntBASIC0□□□□□ -2.41
TFF3Q07654 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0□□□□□ -2.41
TFF3Q07654 AC114797.1-201ENST00000514003 728 ntBASIC0□□□□□ -2.41
TFF3Q07654 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0□□□□□ -2.41
TFF3Q07654 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC0□□□□□ -2.41
TFF3Q07654 AC024060.1-201ENST00000607052 494 ntBASIC0□□□□□ -2.41
TFF3Q07654 AC093838.1-201ENST00000613014 469 ntBASIC0□□□□□ -2.41
TFF3Q07654 AC068057.2-201ENST00000624047 895 ntBASIC0□□□□□ -2.41
TFF3Q07654 RNA5SP258-201ENST00000362750 119 ntBASIC-0.01□□□□□ -2.41
TFF3Q07654 RNU6-105P-201ENST00000363909 104 ntBASIC-0.01□□□□□ -2.41
TFF3Q07654 MIR218-1-201ENST00000384999 110 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms