Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
TNFRSF4P43489 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
TNFRSF4P43489 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
TNFRSF4P43489 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.48□□□□□ -2.01
TNFRSF4P43489 AC008264.2-201ENST00000610193 3731 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 MIR181B1-201ENST00000385240 110 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AL590004.2-201ENST00000404787 371 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AC007064.1-201ENST00000412238 351 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 BX682237.1-201ENST00000415016 335 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AL109913.1-201ENST00000421173 514 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 USP9YP14-201ENST00000430663 563 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AL358934.1-201ENST00000432346 324 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 MRPL50P4-201ENST00000446432 475 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AL136380.1-201ENST00000447970 162 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 snoU13.26-201ENST00000459452 105 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
TNFRSF4P43489 AC109927.2-201ENST00000506416 303 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 RNU6-572P-201ENST00000516724 80 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 RNU6-1220P-201ENST00000517126 108 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AC025755.1-201ENST00000521306 278 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AC022616.3-201ENST00000523940 148 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AC021269.2-201ENST00000532318 330 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 AGGF1P4-201ENST00000568249 801 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 MIR3117-201ENST00000584034 78 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 AC078899.3-201ENST00000599065 212 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 AC245014.2-201ENST00000603689 287 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AC246785.4-201ENST00000605374 287 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AL359547.2-201ENST00000615810 418 ntBASIC2.48□□□□□ -2.01
TNFRSF4P43489 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.48□□□□□ -2.01
TNFRSF4P43489 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
TNFRSF4P43489 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
TNFRSF4P43489 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.47□□□□□ -2.01
TNFRSF4P43489 AC010329.5-201ENST00000623497 2174 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.47□□□□□ -2.01
TNFRSF4P43489 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
TNFRSF4P43489 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
TNFRSF4P43489 SNORA4.3-201ENST00000365564 137 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
TNFRSF4P43489 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
TNFRSF4P43489 RNU6-641P-201ENST00000384006 107 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 MIR558-201ENST00000384920 94 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 RNU2-39P-201ENST00000410604 198 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 RNU2-16P-201ENST00000410712 136 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 AC007560.1-201ENST00000426912 237 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 MED13P1-201ENST00000428342 171 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 AL139415.2-201ENST00000431968 163 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 RPL36AP6-201ENST00000435770 321 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.47□□□□□ -2.01
TNFRSF4P43489 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.47□□□□□ -2.01
TNFRSF4P43489 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.47□□□□□ -2.01
TNFRSF4P43489 snoU13.15-201ENST00000459407 104 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 AC082651.2-201ENST00000496833 166 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 AC091435.1-201ENST00000505442 584 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 AC009902.1-201ENST00000519351 183 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 CKS1BP7-201ENST00000522230 235 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 OR5B19P-201ENST00000531766 928 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.47□□□□□ -2.01
TNFRSF4P43489 AC087883.1-201ENST00000551882 391 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 AL391840.1-201ENST00000571144 367 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 MIR3616-201ENST00000584070 92 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.47□□□□□ -2.01
TNFRSF4P43489 AC005261.5-201ENST00000596280 355 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 AC068790.2-201ENST00000602601 557 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 MIR15A-201ENST00000607334 83 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 AC107871.2-201ENST00000612894 502 ntBASIC2.47□□□□□ -2.01
TNFRSF4P43489 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
TNFRSF4P43489 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.01
TNFRSF4P43489 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
TNFRSF4P43489 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.46□□□□□ -2.02
TNFRSF4P43489 RNU6-19P-201ENST00000384718 107 ntBASIC2.46□□□□□ -2.02
TNFRSF4P43489 AL356057.2-201ENST00000403318 432 ntBASIC2.46□□□□□ -2.02
TNFRSF4P43489 RNU6-1025P-201ENST00000410629 104 ntBASIC2.46□□□□□ -2.02
TNFRSF4P43489 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.46□□□□□ -2.02
TNFRSF4P43489 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.46□□□□□ -2.02
TNFRSF4P43489 DPH3P2-201ENST00000422618 250 ntBASIC2.46□□□□□ -2.02
TNFRSF4P43489 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.46□□□□□ -2.02
TNFRSF4P43489 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.46□□□□□ -2.02
TNFRSF4P43489 AL445687.1-201ENST00000439946 251 ntBASIC2.46□□□□□ -2.02
TNFRSF4P43489 AL353705.4-201ENST00000449661 238 ntBASIC2.46□□□□□ -2.02
TNFRSF4P43489 RN7SL283P-201ENST00000489055 303 ntBASIC2.46□□□□□ -2.02
TNFRSF4P43489 RPS29P21-201ENST00000496272 170 ntBASIC2.46□□□□□ -2.02
TNFRSF4P43489 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.46□□□□□ -2.02
TNFRSF4P43489 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.46□□□□□ -2.02
TNFRSF4P43489 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.46□□□□□ -2.02
TNFRSF4P43489 AC117522.1-201ENST00000509821 380 ntBASIC2.46□□□□□ -2.02
TNFRSF4P43489 Y_RNA.655-201ENST00000515919 96 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 183.2 ms