Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RNU6-1167P-201ENST00000363227 94 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 SNORA67.1-201ENST00000364749 141 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 SNORA23-201ENST00000365128 182 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 RNU1-39P-201ENST00000383897 165 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
BRCA1P38398 RPL26P27-201ENST00000414397 437 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 EDDM3CP-201ENST00000415977 425 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.85□□□□□ -2.11
BRCA1P38398 AC006366.1-201ENST00000422002 759 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 PTGES3P4-201ENST00000426243 356 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 ZNF736P5Y-201ENST00000451173 805 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.85□□□□□ -2.11
BRCA1P38398 ANKRD26P4-201ENST00000455755 950 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 NDUFB4P2-201ENST00000509515 391 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 RNA5SP364-201ENST00000516938 78 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 MIR3618-201ENST00000580330 88 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 MTATP6P3-201ENST00000581686 676 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 MIR3660-201ENST00000584845 100 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.85□□□□□ -2.11
BRCA1P38398 AC072039.2-201ENST00000608883 439 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 AL161423.1-201ENST00000613700 262 ntBASIC1.85□□□□□ -2.11
BRCA1P38398 HSPE1P11-201ENST00000339579 310 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 MIR17-201ENST00000385012 84 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 MIR1302-8-201ENST00000408342 128 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 HMGN2P38-201ENST00000423806 265 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC1.84□□□□□ -2.11
BRCA1P38398 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.84□□□□□ -2.11
BRCA1P38398 AC117503.1-201ENST00000472241 394 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 AC090096.1-201ENST00000489168 390 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 AC023141.11-201ENST00000508864 202 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.84□□□□□ -2.11
BRCA1P38398 RNU6-581P-201ENST00000516214 105 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 SNORA31.24-201ENST00000517232 57 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 AC023538.1-201ENST00000534576 736 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 CR383656.8-201ENST00000549046 145 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC1.84□□□□□ -2.11
BRCA1P38398 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.84□□□□□ -2.11
BRCA1P38398 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1.84□□□□□ -2.11
BRCA1P38398 AF038458.1-201ENST00000588406 262 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 AC069294.1-201ENST00000608397 350 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.11
BRCA1P38398 MIR6734-201ENST00000621166 68 ntBASIC1.84□□□□□ -2.11
BRCA1P38398 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
BRCA1P38398 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.84□□□□□ -2.12
BRCA1P38398 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.84□□□□□ -2.12
BRCA1P38398 RNU6-777P-201ENST00000364265 104 ntBASIC1.84□□□□□ -2.12
BRCA1P38398 MIR524-201ENST00000385242 87 ntBASIC1.84□□□□□ -2.12
BRCA1P38398 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.84□□□□□ -2.12
BRCA1P38398 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC1.84□□□□□ -2.12
BRCA1P38398 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC1.84□□□□□ -2.12
BRCA1P38398 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.84□□□□□ -2.12
BRCA1P38398 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC1.84□□□□□ -2.12
BRCA1P38398 AC006199.1-201ENST00000548728 219 ntBASIC1.84□□□□□ -2.12
BRCA1P38398 AL121821.2-201ENST00000556081 394 ntBASIC1.84□□□□□ -2.12
BRCA1P38398 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.84□□□□□ -2.12
BRCA1P38398 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.84□□□□□ -2.12
BRCA1P38398 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.84□□□□□ -2.12
BRCA1P38398 AC012640.5-201ENST00000623897 319 ntBASIC1.84□□□□□ -2.12
BRCA1P38398 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
BRCA1P38398 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
BRCA1P38398 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
BRCA1P38398 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
BRCA1P38398 RNY4P24-201ENST00000362735 96 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 RNA5SP125-201ENST00000364843 120 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 SNORD48-201ENST00000364953 64 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.83□□□□□ -2.12
BRCA1P38398 RNU6-1-201ENST00000383898 107 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 SNORA6-201ENST00000384033 151 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 RNU6-42P-201ENST00000384165 107 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 RNU6-36P-201ENST00000384172 107 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 RNU6-4P-201ENST00000384205 107 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 RNU6-5P-201ENST00000384238 107 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 RNU6-3P-201ENST00000384314 107 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 RNU6-2-201ENST00000384627 107 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 RNU6-9-201ENST00000384776 107 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 RNU6-33P-201ENST00000384793 107 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
BRCA1P38398 AL109913.1-201ENST00000421173 514 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 MTND1P28-201ENST00000435623 950 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 AC004383.1-201ENST00000438135 289 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 KATNBL1P3-201ENST00000443475 909 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.83□□□□□ -2.12
BRCA1P38398 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.83□□□□□ -2.12
BRCA1P38398 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.83□□□□□ -2.12
BRCA1P38398 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC1.83□□□□□ -2.12
BRCA1P38398 AC105252.1-201ENST00000503089 286 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 AP004247.1-201ENST00000531556 1289 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC1.83□□□□□ -2.12
BRCA1P38398 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.83□□□□□ -2.12
BRCA1P38398 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.83□□□□□ -2.12
BRCA1P38398 ROCK1P1-201ENST00000573767 549 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC1.83□□□□□ -2.12
BRCA1P38398 MIR4529-201ENST00000578110 78 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 UBE2L4-201ENST00000587688 464 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.83□□□□□ -2.12
BRCA1P38398 RNU6-6P-201ENST00000606623 107 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC1.83□□□□□ -2.12
BRCA1P38398 PART1_2.1-201ENST00000612397 250 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 TUG1_2.1-201ENST00000614234 87 ntBASIC1.83□□□□□ -2.12
BRCA1P38398 AL158801.5-201ENST00000623123 465 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms