Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 UBA52P6-201ENST00000399822 382 ntBASIC3.36□□□□□ -1.87
CIITAP33076 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.36□□□□□ -1.87
CIITAP33076 RNU4-46P-201ENST00000410818 138 ntBASIC3.36□□□□□ -1.87
CIITAP33076 AC096664.2-201ENST00000411843 406 ntBASIC3.36□□□□□ -1.87
CIITAP33076 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.36□□□□□ -1.87
CIITAP33076 AL139132.1-201ENST00000431587 344 ntBASIC3.36□□□□□ -1.87
CIITAP33076 IFNA20P-201ENST00000436840 528 ntBASIC3.36□□□□□ -1.87
CIITAP33076 RPS15AP27-201ENST00000449183 343 ntBASIC3.36□□□□□ -1.87
CIITAP33076 SCARNA18-201ENST00000459004 134 ntBASIC3.36□□□□□ -1.87
CIITAP33076 RNU6-1208P-201ENST00000459588 107 ntBASIC3.36□□□□□ -1.87
CIITAP33076 RNU6-329P-201ENST00000459618 107 ntBASIC3.36□□□□□ -1.87
CIITAP33076 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.36□□□□□ -1.87
CIITAP33076 AL049874.1-201ENST00000489560 388 ntBASIC3.36□□□□□ -1.87
CIITAP33076 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.36□□□□□ -1.87
CIITAP33076 FGF7P4-201ENST00000509595 295 ntBASIC3.36□□□□□ -1.87
CIITAP33076 AC068657.1-201ENST00000520807 306 ntBASIC3.36□□□□□ -1.87
CIITAP33076 MTND4P7-201ENST00000523876 130 ntBASIC3.36□□□□□ -1.87
CIITAP33076 ATP5F1P5-201ENST00000526403 760 ntBASIC3.36□□□□□ -1.87
CIITAP33076 AC243972.3-201ENST00000539655 198 ntBASIC3.36□□□□□ -1.87
CIITAP33076 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.36□□□□□ -1.87
CIITAP33076 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC3.36□□□□□ -1.87
CIITAP33076 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.36□□□□□ -1.87
CIITAP33076 CTHRC1P1-201ENST00000605383 469 ntBASIC3.36□□□□□ -1.87
CIITAP33076 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.36□□□□□ -1.87
CIITAP33076 AC092807.2-201ENST00000609367 243 ntBASIC3.36□□□□□ -1.87
CIITAP33076 DUSP12P1-201ENST00000612874 516 ntBASIC3.36□□□□□ -1.87
CIITAP33076 AC090132.2-201ENST00000615881 347 ntBASIC3.36□□□□□ -1.87
CIITAP33076 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
CIITAP33076 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CIITAP33076 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.36□□□□□ -1.87
CIITAP33076 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CIITAP33076 Y_RNA.813-201ENST00000364639 102 ntBASIC3.35□□□□□ -1.87
CIITAP33076 RNU6-116P-201ENST00000384042 109 ntBASIC3.35□□□□□ -1.87
CIITAP33076 RNU6-851P-201ENST00000384565 107 ntBASIC3.35□□□□□ -1.87
CIITAP33076 RNU6-817P-201ENST00000391083 104 ntBASIC3.35□□□□□ -1.87
CIITAP33076 CISD1P1-201ENST00000393907 327 ntBASIC3.35□□□□□ -1.87
CIITAP33076 Z92545.1-201ENST00000411782 234 ntBASIC3.35□□□□□ -1.87
CIITAP33076 AL513331.1-201ENST00000411908 397 ntBASIC3.35□□□□□ -1.87
CIITAP33076 EEF1A1P40-201ENST00000412883 573 ntBASIC3.35□□□□□ -1.87
CIITAP33076 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CIITAP33076 AL669831.1-202ENST00000428504 417 ntBASIC3.35□□□□□ -1.87
CIITAP33076 RPL21P40-201ENST00000428586 483 ntBASIC3.35□□□□□ -1.87
CIITAP33076 GTF2IP13-201ENST00000438487 386 ntBASIC3.35□□□□□ -1.87
CIITAP33076 PRPS1P1-201ENST00000445305 876 ntBASIC3.35□□□□□ -1.87
CIITAP33076 UBE2V1P7-201ENST00000446395 340 ntBASIC3.35□□□□□ -1.87
CIITAP33076 RPL7P12-201ENST00000446719 750 ntBASIC3.35□□□□□ -1.87
CIITAP33076 FABP5P13-201ENST00000452144 328 ntBASIC3.35□□□□□ -1.87
CIITAP33076 AC006483.1-201ENST00000487308 313 ntBASIC3.35□□□□□ -1.87
CIITAP33076 AC092185.1-201ENST00000491371 97 ntBASIC3.35□□□□□ -1.87
CIITAP33076 MTND3P22-201ENST00000510932 243 ntBASIC3.35□□□□□ -1.87
CIITAP33076 RNU4-49P-201ENST00000516080 140 ntBASIC3.35□□□□□ -1.87
CIITAP33076 RNU6-1282P-201ENST00000516735 96 ntBASIC3.35□□□□□ -1.87
CIITAP33076 RNU7-30P-201ENST00000516835 62 ntBASIC3.35□□□□□ -1.87
CIITAP33076 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.35□□□□□ -1.87
CIITAP33076 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.35□□□□□ -1.87
CIITAP33076 AC087241.2-201ENST00000535801 324 ntBASIC3.35□□□□□ -1.87
CIITAP33076 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.35□□□□□ -1.87
CIITAP33076 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.35□□□□□ -1.87
CIITAP33076 TRAV37-201ENST00000553906 342 ntBASIC3.35□□□□□ -1.87
CIITAP33076 OR11H5P-201ENST00000554039 926 ntBASIC3.35□□□□□ -1.87
CIITAP33076 MIR4742-201ENST00000581069 85 ntBASIC3.35□□□□□ -1.87
CIITAP33076 VN1R80P-201ENST00000597126 338 ntBASIC3.35□□□□□ -1.87
CIITAP33076 AC022893.3-201ENST00000607665 437 ntBASIC3.35□□□□□ -1.87
CIITAP33076 AC135507.2-201ENST00000612443 309 ntBASIC3.35□□□□□ -1.87
CIITAP33076 AP003400.5-201ENST00000624827 617 ntBASIC3.35□□□□□ -1.87
CIITAP33076 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.35□□□□□ -1.87
CIITAP33076 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CIITAP33076 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CIITAP33076 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CIITAP33076 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CIITAP33076 SNORA14A-201ENST00000364773 135 ntBASIC3.34□□□□□ -1.87
CIITAP33076 RNU6-741P-201ENST00000383889 107 ntBASIC3.34□□□□□ -1.87
CIITAP33076 SNORA32.2-201ENST00000384049 122 ntBASIC3.34□□□□□ -1.87
CIITAP33076 Y_RNA.534-201ENST00000384599 112 ntBASIC3.34□□□□□ -1.87
CIITAP33076 SNORA16.2-201ENST00000390991 127 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AL122016.1-201ENST00000403365 367 ntBASIC3.34□□□□□ -1.87
CIITAP33076 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.34□□□□□ -1.87
CIITAP33076 RN7SKP32-201ENST00000410167 303 ntBASIC3.34□□□□□ -1.87
CIITAP33076 RNU4-26P-201ENST00000410270 107 ntBASIC3.34□□□□□ -1.87
CIITAP33076 RPS12P24-201ENST00000412619 387 ntBASIC3.34□□□□□ -1.87
CIITAP33076 MTND3P8-201ENST00000412909 339 ntBASIC3.34□□□□□ -1.87
CIITAP33076 NDUFB4P5-201ENST00000415445 361 ntBASIC3.34□□□□□ -1.87
CIITAP33076 Z85995.1-201ENST00000415547 335 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AC245054.2-201ENST00000415639 319 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC3.34□□□□□ -1.87
CIITAP33076 RPS24P13-201ENST00000442520 397 ntBASIC3.34□□□□□ -1.87
CIITAP33076 MRPL50P4-201ENST00000446432 475 ntBASIC3.34□□□□□ -1.87
CIITAP33076 UQCRHP3-201ENST00000451503 251 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AC007547.1-201ENST00000462177 490 ntBASIC3.34□□□□□ -1.87
CIITAP33076 RPL7P5-201ENST00000471472 736 ntBASIC3.34□□□□□ -1.87
CIITAP33076 RPS29P26-201ENST00000477483 171 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AC083904.1-201ENST00000487828 231 ntBASIC3.34□□□□□ -1.87
CIITAP33076 RN7SL633P-201ENST00000488974 297 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AC083906.5-201ENST00000503722 328 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AC006445.2-201ENST00000510061 472 ntBASIC3.34□□□□□ -1.87
CIITAP33076 RN7SKP43-201ENST00000516173 320 ntBASIC3.34□□□□□ -1.87
CIITAP33076 RNU6-927P-201ENST00000516199 100 ntBASIC3.34□□□□□ -1.87
CIITAP33076 RNA5SP471-201ENST00000516971 106 ntBASIC3.34□□□□□ -1.87
CIITAP33076 RNA5SP380-201ENST00000517190 98 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AC245166.1-201ENST00000521012 253 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 148.3 ms