Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 OR2AS2P-201ENST00000606902 342 ntBASIC2.9□□□□□ -1.95
BDNFP23560 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.9□□□□□ -1.95
BDNFP23560 AC110994.2-201ENST00000635481 492 ntBASIC2.9□□□□□ -1.95
BDNFP23560 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
BDNFP23560 FGF7P2-201ENST00000332473 296 ntBASIC2.89□□□□□ -1.95
BDNFP23560 Y_RNA.22-201ENST00000362492 102 ntBASIC2.89□□□□□ -1.95
BDNFP23560 RNU6-1097P-201ENST00000363586 107 ntBASIC2.89□□□□□ -1.95
BDNFP23560 SNORA75B-201ENST00000384053 137 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AL133475.1-201ENST00000404414 305 ntBASIC2.89□□□□□ -1.95
BDNFP23560 RNA5SP21-201ENST00000410917 96 ntBASIC2.89□□□□□ -1.95
BDNFP23560 RNA5SP184-201ENST00000411071 108 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AF274854.1-201ENST00000413236 615 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.89□□□□□ -1.95
BDNFP23560 NUP35P1-201ENST00000422734 947 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.89□□□□□ -1.95
BDNFP23560 AC063976.3-201ENST00000426849 329 ntBASIC2.89□□□□□ -1.95
BDNFP23560 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.89□□□□□ -1.95
BDNFP23560 GPR143P-201ENST00000434155 205 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.89□□□□□ -1.95
BDNFP23560 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.89□□□□□ -1.95
BDNFP23560 RPS29P6-201ENST00000438196 145 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.89□□□□□ -1.95
BDNFP23560 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.89□□□□□ -1.95
BDNFP23560 UBE2DNL-203ENST00000474922 222 ntBASIC2.89□□□□□ -1.95
BDNFP23560 MTCYBP35-201ENST00000503630 1137 ntBASIC2.89□□□□□ -1.95
BDNFP23560 HMGB3P3-201ENST00000510526 400 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.89□□□□□ -1.95
BDNFP23560 RNA5SP82-201ENST00000516707 92 ntBASIC2.89□□□□□ -1.95
BDNFP23560 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.89□□□□□ -1.95
BDNFP23560 AP003072.2-201ENST00000527756 676 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AP000889.1-201ENST00000530968 660 ntBASIC2.89□□□□□ -1.95
BDNFP23560 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.89□□□□□ -1.95
BDNFP23560 AC008521.1-201ENST00000587471 187 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AC098848.2-201ENST00000588023 330 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AC012119.1-201ENST00000603184 222 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AC245014.2-201ENST00000603689 287 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AC090578.1-201ENST00000604955 591 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AC246785.4-201ENST00000605374 287 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AC009233.1-201ENST00000616477 371 ntBASIC2.89□□□□□ -1.95
BDNFP23560 Z99129.2-201ENST00000619967 314 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AP003485.2-201ENST00000623636 610 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AL603839.4-201ENST00000624658 1005 ntBASIC2.89□□□□□ -1.95
BDNFP23560 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.89□□□□□ -1.95
BDNFP23560 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.89□□□□□ -1.95
BDNFP23560 RBBP8P1-201ENST00000449447 1844 ntBASIC2.89□□□□□ -1.95
BDNFP23560 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.88□□□□□ -1.95
BDNFP23560 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.88□□□□□ -1.95
BDNFP23560 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.88□□□□□ -1.95
BDNFP23560 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.88□□□□□ -1.95
BDNFP23560 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.88□□□□□ -1.95
BDNFP23560 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
BDNFP23560 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.88□□□□□ -1.95
BDNFP23560 MIR26A1-201ENST00000362205 77 ntBASIC2.88□□□□□ -1.95
BDNFP23560 RNU6-169P-201ENST00000365336 107 ntBASIC2.88□□□□□ -1.95
BDNFP23560 RNY3P10-201ENST00000384764 102 ntBASIC2.88□□□□□ -1.95
BDNFP23560 MIR9-1-201ENST00000385198 89 ntBASIC2.88□□□□□ -1.95
BDNFP23560 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.88□□□□□ -1.95
BDNFP23560 UBE2V1P10-201ENST00000414685 269 ntBASIC2.88□□□□□ -1.95
BDNFP23560 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.88□□□□□ -1.95
BDNFP23560 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.88□□□□□ -1.95
BDNFP23560 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.88□□□□□ -1.95
BDNFP23560 AL109933.2-201ENST00000452651 260 ntBASIC2.88□□□□□ -1.95
BDNFP23560 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.88□□□□□ -1.95
BDNFP23560 AC022364.2-201ENST00000457963 554 ntBASIC2.88□□□□□ -1.95
BDNFP23560 KLF3P2-201ENST00000465138 268 ntBASIC2.88□□□□□ -1.95
BDNFP23560 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.88□□□□□ -1.95
BDNFP23560 RNA5SP76-201ENST00000516277 87 ntBASIC2.88□□□□□ -1.95
BDNFP23560 SNORA48.11-201ENST00000517015 89 ntBASIC2.88□□□□□ -1.95
BDNFP23560 RNU6-685P-201ENST00000517088 95 ntBASIC2.88□□□□□ -1.95
BDNFP23560 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.88□□□□□ -1.95
BDNFP23560 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.88□□□□□ -1.95
BDNFP23560 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.88□□□□□ -1.95
BDNFP23560 AP002453.2-201ENST00000533503 320 ntBASIC2.88□□□□□ -1.95
BDNFP23560 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.88□□□□□ -1.95
BDNFP23560 MIR3605-201ENST00000583214 100 ntBASIC2.88□□□□□ -1.95
BDNFP23560 AC093788.1-201ENST00000609356 927 ntBASIC2.88□□□□□ -1.95
BDNFP23560 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.88□□□□□ -1.95
BDNFP23560 uc_338.11-201ENST00000619132 160 ntBASIC2.88□□□□□ -1.95
BDNFP23560 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.88□□□□□ -1.95
BDNFP23560 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.88□□□□□ -1.95
BDNFP23560 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.87□□□□□ -1.95
BDNFP23560 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.87□□□□□ -1.95
BDNFP23560 SNORA6-201ENST00000384033 151 ntBASIC2.87□□□□□ -1.95
BDNFP23560 MIR95-201ENST00000385072 81 ntBASIC2.87□□□□□ -1.95
BDNFP23560 AL356057.3-201ENST00000402607 340 ntBASIC2.87□□□□□ -1.95
BDNFP23560 ARL5AP4-201ENST00000430731 512 ntBASIC2.87□□□□□ -1.95
BDNFP23560 AC112220.1-201ENST00000434628 355 ntBASIC2.87□□□□□ -1.95
BDNFP23560 IFNA11P-201ENST00000446352 526 ntBASIC2.87□□□□□ -1.95
BDNFP23560 AC104058.1-201ENST00000448028 297 ntBASIC2.87□□□□□ -1.95
BDNFP23560 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.87□□□□□ -1.95
BDNFP23560 SNORD42A-201ENST00000459584 64 ntBASIC2.87□□□□□ -1.95
BDNFP23560 RAP1BP2-201ENST00000478270 544 ntBASIC2.87□□□□□ -1.95
BDNFP23560 AC090525.1-201ENST00000479116 478 ntBASIC2.87□□□□□ -1.95
BDNFP23560 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.87□□□□□ -1.95
BDNFP23560 SCARNA24.1-201ENST00000516465 137 ntBASIC2.87□□□□□ -1.95
BDNFP23560 MTCYBP20-201ENST00000524239 1129 ntBASIC2.87□□□□□ -1.95
BDNFP23560 AP001646.1-201ENST00000527936 915 ntBASIC2.87□□□□□ -1.95
BDNFP23560 CBX3P7-201ENST00000532876 502 ntBASIC2.87□□□□□ -1.95
BDNFP23560 CYCSP26-201ENST00000534107 320 ntBASIC2.87□□□□□ -1.95
BDNFP23560 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms