Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL121769.1-201ENST00000469473 401 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 RN7SL499P-201ENST00000481141 276 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 AC096576.1-201ENST00000489014 359 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 HMGB1P30-201ENST00000492455 606 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
VPS28Q9UK41 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS28Q9UK41 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.94□□□□□ -1.94
VPS28Q9UK41 AC092325.1-201ENST00000566449 554 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 AC024153.1-201ENST00000603103 365 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 AC245008.1-201ENST00000608123 476 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 AC107871.2-201ENST00000612894 502 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS28Q9UK41 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.94□□□□□ -1.94
VPS28Q9UK41 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
VPS28Q9UK41 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
VPS28Q9UK41 AC080128.1-201ENST00000474389 1917 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 HSPA8P4-201ENST00000511877 1920 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 Y_RNA.51-201ENST00000362725 102 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 SNORA80A-201ENST00000363922 136 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 U8.9-201ENST00000365667 134 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 MIR10A-201ENST00000385043 110 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
VPS28Q9UK41 RNU6-550P-201ENST00000391057 101 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 DEFB108C-201ENST00000400154 252 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 BX682237.1-201ENST00000415016 335 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS28Q9UK41 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS28Q9UK41 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS28Q9UK41 AL360271.2-201ENST00000447710 161 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 AL590639.1-201ENST00000456484 337 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 RPS29P15-201ENST00000458329 171 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 AP001486.1-201ENST00000463339 476 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 AC079382.1-201ENST00000493346 557 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 RNA5SP367-201ENST00000516557 118 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 SCARNA13-201ENST00000516672 275 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS28Q9UK41 OR5AQ1P-201ENST00000527596 927 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS28Q9UK41 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS28Q9UK41 AL356280.1-201ENST00000603614 379 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 uc_338.11-201ENST00000619132 160 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 AC136475.10-201ENST00000620253 385 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 MIR6733-201ENST00000635723 61 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 MIR7157-201ENST00000635801 60 ntBASIC2.93□□□□□ -1.94
VPS28Q9UK41 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS28Q9UK41 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS28Q9UK41 AL359854.1-201ENST00000614203 1594 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
VPS28Q9UK41 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VPS28Q9UK41 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS28Q9UK41 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS28Q9UK41 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS28Q9UK41 RNU6-1029P-201ENST00000384109 107 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 SNORA18.3-201ENST00000384122 132 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 RNU6-1119P-201ENST00000384349 108 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 RNU6-606P-201ENST00000384721 111 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 MIR634-201ENST00000385208 97 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 U3.37-201ENST00000408528 213 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 AL592148.1-201ENST00000413568 445 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 RPL21P90-201ENST00000415692 466 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 AC016831.2-201ENST00000417179 352 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 MTATP6P18-201ENST00000417994 673 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.92□□□□□ -1.94
VPS28Q9UK41 MICF-203ENST00000432679 129 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 AL596276.1-201ENST00000434465 418 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 FABP5P14-201ENST00000437273 393 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 RPS15AP9-201ENST00000439856 381 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 AL162395.1-201ENST00000457882 422 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 AP001324.2-201ENST00000461163 319 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 AL049873.1-201ENST00000480540 376 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 HIGD1AP13-201ENST00000509878 289 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS28Q9UK41 MIR4765-201ENST00000585007 77 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 AL033523.1-201ENST00000605153 153 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS28Q9UK41 AC092656.1-203ENST00000624134 423 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS28Q9UK41 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS28Q9UK41 AC108206.1-201ENST00000570186 4159 ntBASIC2.92□□□□□ -1.94
VPS28Q9UK41 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VPS28Q9UK41 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS28Q9UK41 AC092447.7-201ENST00000422212 1621 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
VPS28Q9UK41 RNU6-1120P-201ENST00000362988 108 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 RNU6-371P-201ENST00000364283 108 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 RNU4-46P-201ENST00000410818 138 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS28Q9UK41 AC073464.1-201ENST00000429823 534 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 AC004383.1-201ENST00000438135 289 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 MTND1P29-201ENST00000448112 647 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 RPS3AP17-201ENST00000472594 777 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS28Q9UK41 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
VPS28Q9UK41 AC117522.2-201ENST00000510049 657 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 AC091826.1-201ENST00000514065 313 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS28Q9UK41 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS28Q9UK41 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS28Q9UK41 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms