Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 MIR3672-201ENST00000584290 82 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AC012669.1-201ENST00000603209 283 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AC022893.3-201ENST00000607665 437 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AC090425.1-201ENST00000610007 140 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 DUSP12P1-201ENST00000612874 516 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 uc_338.34-201ENST00000617467 174 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AL136313.1-201ENST00000624804 202 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 ZNF807-201ENST00000328088 1707 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AP001350.1-201ENST00000601906 1524 ntBASIC3.38□□□□□ -1.87
EBF3Q9H4W6 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.38□□□□□ -1.87
EBF3Q9H4W6 AC007496.3-201ENST00000624987 3443 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 MIR422A-201ENST00000362286 90 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 SNORA31-201ENST00000362607 130 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 RNU1-70P-201ENST00000362618 164 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 Y_RNA.112-201ENST00000363250 102 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 RNU6-1188P-201ENST00000363795 107 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AL136372.1-201ENST00000403060 228 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AL583834.1-201ENST00000406943 343 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 MIR548F4-201ENST00000408515 105 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 RNU2-36P-201ENST00000410361 191 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 RNU2-29P-201ENST00000410423 189 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 RNU6-712P-201ENST00000410558 100 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC114491.1-201ENST00000416095 246 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC099677.1-201ENST00000420575 175 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC008264.1-201ENST00000447612 367 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 RN7SL863P-201ENST00000462370 296 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 RPL21P93-201ENST00000480465 489 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC078918.1-201ENST00000498515 228 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 RN7SKP24-201ENST00000515888 284 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 RNU6-566P-201ENST00000516790 107 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 EIF4BP1-201ENST00000554881 351 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AL117187.1-201ENST00000555482 181 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AF038458.1-201ENST00000588406 262 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 Z82243.1-201ENST00000609432 473 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC087588.2-201ENST00000617667 426 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC007792.1-201ENST00000623023 402 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC006386.2-201ENST00000624491 75 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC012005.1-201ENST00000624575 75 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 U6.98-201ENST00000637157 84 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 SRP72P2-201ENST00000344851 1979 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 AC121333.1-201ENST00000567488 2709 ntBASIC3.37□□□□□ -1.87
EBF3Q9H4W6 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
EBF3Q9H4W6 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 RNA5SP383-201ENST00000362934 120 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 RNU6-1284P-201ENST00000363701 100 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 Y_RNA.193-201ENST00000363979 102 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 RNU5E-6P-201ENST00000365574 115 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 RNU6-641P-201ENST00000384006 107 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 MIR135A2-201ENST00000384854 100 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 RPL37P10-201ENST00000412884 288 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AC074085.1-201ENST00000413598 418 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 EI24P1-201ENST00000416584 867 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 FABP5P14-201ENST00000437273 393 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AC107399.1-201ENST00000451226 265 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 ELOCP24-201ENST00000456370 334 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 SNORD97-201ENST00000459187 142 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 RPL23AP67-201ENST00000465341 474 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 RPS27AP1-201ENST00000475545 471 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AC092185.1-201ENST00000491371 97 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 RNU6-1213P-201ENST00000517075 94 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 RNA5SP380-201ENST00000517190 98 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AC090136.1-201ENST00000520009 240 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 FAM60DP-201ENST00000524174 632 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 LARP7P3-201ENST00000579888 337 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 MIR4680-201ENST00000580906 66 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms