Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-548P-201ENST00000517083 115 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 SCARNA1-201ENST00000517138 166 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC1.57□□□□□ -2.16
FOXA1P55317 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 AP006587.4-201ENST00000526053 529 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 MTATP6P15-201ENST00000527233 835 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC1.57□□□□□ -2.16
FOXA1P55317 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA1P55317 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC1.57□□□□□ -2.16
FOXA1P55317 AC021739.1-201ENST00000559631 174 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 AC090897.2-201ENST00000581715 130 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 MIR3199-1-201ENST00000582434 88 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 BNIP3P40-201ENST00000596017 556 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 AC008121.1-201ENST00000603244 268 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 AL136370.1-201ENST00000608166 691 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 AL627230.6-201ENST00000611129 280 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA1P55317 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA1P55317 ZNF72P-201ENST00000425869 1908 ntBASIC1.57□□□□□ -2.16
FOXA1P55317 AC002543.1-201ENST00000299783 1954 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 SNORA16B-201ENST00000364674 135 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 Y_RNA.302-201ENST00000364997 102 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 RNU6-701P-201ENST00000384059 107 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 RNU6-14P-201ENST00000384630 106 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 MIR218-1-201ENST00000384999 110 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
FOXA1P55317 RN7SKP101-201ENST00000411376 320 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 POLHP1-201ENST00000411806 470 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC1.56□□□□□ -2.16
FOXA1P55317 AL109913.1-201ENST00000421173 514 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC1.56□□□□□ -2.16
FOXA1P55317 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.56□□□□□ -2.16
FOXA1P55317 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.56□□□□□ -2.16
FOXA1P55317 MTND1P20-201ENST00000430341 950 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC1.56□□□□□ -2.16
FOXA1P55317 AC007677.1-201ENST00000445757 515 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 HMGN2P10-201ENST00000448085 265 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.56□□□□□ -2.16
FOXA1P55317 ANKRD26P4-201ENST00000455755 950 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AC104564.1-201ENST00000493028 407 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.56□□□□□ -2.16
FOXA1P55317 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC1.56□□□□□ -2.16
FOXA1P55317 RNU6-311P-201ENST00000516224 102 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 RNU6-703P-201ENST00000516946 107 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC1.56□□□□□ -2.16
FOXA1P55317 AC006199.1-201ENST00000548728 219 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 MRPS36P5-201ENST00000551909 298 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.56□□□□□ -2.16
FOXA1P55317 AL356432.3-201ENST00000568952 465 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 MIR3167-201ENST00000579623 85 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 MIR4307-201ENST00000582802 84 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AC073544.2-201ENST00000601155 540 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AL031281.1-201ENST00000604049 488 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AL355598.1-201ENST00000604169 202 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AL391813.2-201ENST00000609113 322 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AC090970.3-201ENST00000612566 866 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AC016597.2-201ENST00000613256 341 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.56□□□□□ -2.16
FOXA1P55317 AC021755.4-201ENST00000616620 456 ntBASIC1.56□□□□□ -2.16
FOXA1P55317 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.56□□□□□ -2.16
FOXA1P55317 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.56□□□□□ -2.16
FOXA1P55317 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
FOXA1P55317 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
FOXA1P55317 NACAP2-201ENST00000318548 624 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.55□□□□□ -2.16
FOXA1P55317 Y_RNA.46-201ENST00000362695 102 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
FOXA1P55317 Z98749.2-208ENST00000381646 500 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 SNORA26.9-201ENST00000391322 122 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 RNU6-584P-201ENST00000410350 95 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 EIF4EP4-201ENST00000424916 578 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.55□□□□□ -2.16
FOXA1P55317 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC1.55□□□□□ -2.16
FOXA1P55317 MTATP6P7-201ENST00000453315 681 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 MTCO1P42-201ENST00000457379 726 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.55□□□□□ -2.16
FOXA1P55317 MRPS17P9-201ENST00000511924 393 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 SNORA31.23-201ENST00000517219 133 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.55□□□□□ -2.16
FOXA1P55317 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC1.55□□□□□ -2.16
FOXA1P55317 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
FOXA1P55317 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.55□□□□□ -2.16
FOXA1P55317 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
FOXA1P55317 AC078899.2-201ENST00000595282 212 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 AC245884.10-201ENST00000597355 337 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 AL109918.3-201ENST00000603072 338 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 AC105148.1-201ENST00000604961 409 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 AC007490.1-201ENST00000624321 703 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC1.55□□□□□ -2.16
FOXA1P55317 MIR7157-201ENST00000635801 60 ntBASIC1.55□□□□□ -2.16
FOXA1P55317 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
FOXA1P55317 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
FOXA1P55317 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.55□□□□□ -2.16
FOXA1P55317 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.54□□□□□ -2.16
FOXA1P55317 RNU6-1159P-201ENST00000362933 107 ntBASIC1.54□□□□□ -2.16
FOXA1P55317 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms