Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.16□□□□□ -1.9
SHMT1P34896 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.16□□□□□ -1.9
SHMT1P34896 AL135752.1-201ENST00000479477 471 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 RN7SL283P-201ENST00000489055 303 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 MTAPP1-201ENST00000489154 819 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 RNU6-914P-201ENST00000516749 109 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 RN7SKP219-201ENST00000516825 296 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 SNORD59.2-201ENST00000516873 68 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.16□□□□□ -1.9
SHMT1P34896 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.16□□□□□ -1.9
SHMT1P34896 AC234778.2-201ENST00000566241 354 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 AC136601.2-201ENST00000604356 474 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 AL670379.4-201ENST00000605279 254 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 AC068831.7-201ENST00000616954 363 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.16□□□□□ -1.9
SHMT1P34896 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHMT1P34896 CKAP2P1-201ENST00000555477 2049 ntBASIC3.15□□□□□ -1.9
SHMT1P34896 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
SHMT1P34896 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
SHMT1P34896 AC092435.3-201ENST00000565538 3654 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 AL139276.1-201ENST00000311910 1001 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 RPL9P7-201ENST00000330965 580 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 RNA5SP68-201ENST00000363885 119 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 Y_RNA.453-201ENST00000384223 109 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 Y_RNA.534-201ENST00000384599 112 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 MIR301A-201ENST00000385261 86 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 RNA5SP111-201ENST00000411386 101 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 OR6C66P-201ENST00000414917 930 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 ZNF863P-201ENST00000426746 417 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 AL592045.1-201ENST00000429867 352 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.15□□□□□ -1.91
SHMT1P34896 SEPT14P3-201ENST00000439401 183 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 AL732372.2-207ENST00000445840 183 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 AC073415.1-201ENST00000449240 153 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 FGF7P6-202ENST00000451282 293 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.15□□□□□ -1.91
SHMT1P34896 SEPT14P2-201ENST00000453405 183 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 FABP5P15-201ENST00000453566 214 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 AL162395.1-201ENST00000457882 422 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 RN7SL429P-201ENST00000479090 223 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 RPL30P14-201ENST00000482744 348 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 AC233702.1-201ENST00000482905 502 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 RN7SL489P-201ENST00000486185 223 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 RN7SL327P-201ENST00000488659 223 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 SEPT14P4-201ENST00000513445 186 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 RNU6-835P-201ENST00000516974 104 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 RNU6-711P-201ENST00000517255 106 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 FO082796.1-201ENST00000523795 183 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.15□□□□□ -1.91
SHMT1P34896 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.15□□□□□ -1.91
SHMT1P34896 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.15□□□□□ -1.91
SHMT1P34896 AP001094.1-201ENST00000579805 193 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC3.15□□□□□ -1.91
SHMT1P34896 AL138889.2-201ENST00000603883 242 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 MIR15A-201ENST00000607334 83 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
SHMT1P34896 MIR6817-201ENST00000615588 66 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 RN7SL853P-201ENST00000617250 223 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.15□□□□□ -1.91
SHMT1P34896 IGHVIII-44-202ENST00000636235 289 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 MIR3688-2-201ENST00000636963 87 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.15□□□□□ -1.91
SHMT1P34896 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
SHMT1P34896 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.91
SHMT1P34896 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SHMT1P34896 MTND4P14-201ENST00000435799 1354 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
SHMT1P34896 AC009487.2-201ENST00000420969 6821 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
SHMT1P34896 RNU6-217P-201ENST00000384164 104 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 RNU6-301P-201ENST00000384277 107 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 RNU6-140P-201ENST00000384566 108 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
SHMT1P34896 RNU6-903P-201ENST00000391270 109 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 CISD1P1-201ENST00000393907 327 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 AL139039.1-201ENST00000401900 692 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.14□□□□□ -1.91
SHMT1P34896 RN7SKP123-201ENST00000410732 291 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 RNU4-46P-201ENST00000410818 138 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.14□□□□□ -1.91
SHMT1P34896 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.14□□□□□ -1.91
SHMT1P34896 CACYBPP2-201ENST00000453625 678 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.14□□□□□ -1.91
SHMT1P34896 TRBV1-201ENST00000476502 284 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.14□□□□□ -1.91
SHMT1P34896 AC109927.2-201ENST00000506416 303 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 AC092436.1-201ENST00000506450 503 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 AF213884.2-201ENST00000510417 903 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.14□□□□□ -1.91
SHMT1P34896 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.14□□□□□ -1.91
SHMT1P34896 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.14□□□□□ -1.91
SHMT1P34896 AC010653.1-201ENST00000571108 881 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SHMT1P34896 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.14□□□□□ -1.91
SHMT1P34896 MIR3609-201ENST00000582661 80 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 MIR3605-201ENST00000583214 100 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.14□□□□□ -1.91
SHMT1P34896 AC078899.3-201ENST00000599065 212 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 AL138880.2-201ENST00000616214 239 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 138.2 ms