Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SNRPGP17-201ENST00000603780 214 ntBASIC1.22□□□□□ -2.21
HLA-DMBP28068 AP002802.2-201ENST00000605877 235 ntBASIC1.22□□□□□ -2.21
HLA-DMBP28068 AC103810.8-201ENST00000607347 118 ntBASIC1.22□□□□□ -2.21
HLA-DMBP28068 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.22□□□□□ -2.21
HLA-DMBP28068 AC008121.3-201ENST00000618726 433 ntBASIC1.22□□□□□ -2.21
HLA-DMBP28068 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC1.22□□□□□ -2.21
HLA-DMBP28068 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
HLA-DMBP28068 CISD1P1-201ENST00000393907 327 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 EIF4EP2-201ENST00000422816 654 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 AC104651.1-201ENST00000427559 735 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 AC005094.1-201ENST00000440420 368 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 AL360221.1-201ENST00000445989 335 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 ELOCP30-201ENST00000447108 299 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 AL137159.1-201ENST00000452808 512 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 RPL37P6-201ENST00000460682 294 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 OR5B19P-201ENST00000531766 928 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 GNAI2P1-201ENST00000541815 315 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
HLA-DMBP28068 AL512347.1-201ENST00000566420 503 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 AC060771.1-201ENST00000582031 164 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 MIR4713-201ENST00000582691 75 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 SEPT7P9-203ENST00000604116 343 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 NDUFA8P1-201ENST00000605525 367 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 AC034229.4-201ENST00000607861 441 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 AL359314.1-201ENST00000616913 261 ntBASIC1.21□□□□□ -2.22
HLA-DMBP28068 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
HLA-DMBP28068 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.21□□□□□ -2.22
HLA-DMBP28068 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 AC006026.1-201ENST00000444025 1803 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
HLA-DMBP28068 SNORA40.2-201ENST00000390847 128 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 AC068050.1-201ENST00000394891 380 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 MIR1283-2-201ENST00000408621 87 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 POLHP1-201ENST00000411806 470 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.2□□□□□ -2.22
HLA-DMBP28068 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC1.2□□□□□ -2.22
HLA-DMBP28068 AL358453.1-201ENST00000422522 250 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC1.2□□□□□ -2.22
HLA-DMBP28068 SNRPEP7-201ENST00000438350 220 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.2□□□□□ -2.22
HLA-DMBP28068 USP9YP10-201ENST00000454868 628 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC1.2□□□□□ -2.22
HLA-DMBP28068 RPF2P2-201ENST00000504693 896 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.2□□□□□ -2.22
HLA-DMBP28068 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.2□□□□□ -2.22
HLA-DMBP28068 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
HLA-DMBP28068 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.2□□□□□ -2.22
HLA-DMBP28068 AL354943.1-201ENST00000572103 781 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.2□□□□□ -2.22
HLA-DMBP28068 AP000942.3-201ENST00000603702 160 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 AC104985.3-201ENST00000623479 597 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 AC017037.3-201ENST00000625016 472 ntBASIC1.2□□□□□ -2.22
HLA-DMBP28068 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.2□□□□□ -2.22
HLA-DMBP28068 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.2□□□□□ -2.22
HLA-DMBP28068 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
HLA-DMBP28068 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
HLA-DMBP28068 ZNF876P-202ENST00000398732 1485 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 RNU6-289P-201ENST00000364093 107 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 RNU6-1280P-201ENST00000365211 107 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 MIR19A-201ENST00000384878 82 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 MIR518D-201ENST00000385014 87 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 AL033519.2-201ENST00000403958 392 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC1.19□□□□□ -2.22
HLA-DMBP28068 OR9R1P-201ENST00000412200 877 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 MTND4P3-201ENST00000417829 541 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.19□□□□□ -2.22
HLA-DMBP28068 AC108667.1-201ENST00000428618 249 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC1.19□□□□□ -2.22
HLA-DMBP28068 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC1.19□□□□□ -2.22
HLA-DMBP28068 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC1.19□□□□□ -2.22
HLA-DMBP28068 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.19□□□□□ -2.22
HLA-DMBP28068 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.19□□□□□ -2.22
HLA-DMBP28068 MEMO1P3-201ENST00000459811 302 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 AC023194.1-201ENST00000493084 308 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.19□□□□□ -2.22
HLA-DMBP28068 AC008834.1-201ENST00000511612 175 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 AC117532.1-201ENST00000514638 323 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 AC087894.1-201ENST00000538359 518 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC1.19□□□□□ -2.22
HLA-DMBP28068 ELOCP5-201ENST00000604924 333 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 AC021646.1-201ENST00000605469 484 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 AC087045.1-201ENST00000605856 382 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 U6.99-201ENST00000637524 83 ntBASIC1.19□□□□□ -2.22
HLA-DMBP28068 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.19□□□□□ -2.22
HLA-DMBP28068 TEX21P-201ENST00000447107 1476 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 RNU6-457P-201ENST00000363999 107 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms