Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC079448.1-201ENST00000449377 373 ntBASIC0.35□□□□□ -2.35
COL6A3P12111 AC104108.1-201ENST00000509930 412 ntBASIC0.35□□□□□ -2.35
COL6A3P12111 AL158211.1-201ENST00000566763 763 ntBASIC0.35□□□□□ -2.35
COL6A3P12111 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC0.35□□□□□ -2.35
COL6A3P12111 RNA5SP252-201ENST00000391131 119 ntBASIC0.34□□□□□ -2.35
COL6A3P12111 PRPS1P1-201ENST00000445305 876 ntBASIC0.34□□□□□ -2.35
COL6A3P12111 RPL23AP6-201ENST00000446637 472 ntBASIC0.34□□□□□ -2.35
COL6A3P12111 RPS27P22-201ENST00000478056 241 ntBASIC0.34□□□□□ -2.35
COL6A3P12111 RPL30P11-201ENST00000495304 339 ntBASIC0.34□□□□□ -2.35
COL6A3P12111 MGST1-215ENST00000540056 546 ntTSL 3 BASIC0.34□□□□□ -2.35
COL6A3P12111 AC104763.3-201ENST00000613765 618 ntBASIC0.34□□□□□ -2.35
COL6A3P12111 MIR4496-201ENST00000635896 61 ntBASIC0.34□□□□□ -2.35
COL6A3P12111 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.34□□□□□ -2.36
COL6A3P12111 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.36
COL6A3P12111 RNU1-72P-201ENST00000362976 153 ntBASIC0.34□□□□□ -2.36
COL6A3P12111 MIR607-201ENST00000385241 96 ntBASIC0.34□□□□□ -2.36
COL6A3P12111 MIR147B-201ENST00000390185 80 ntBASIC0.34□□□□□ -2.36
COL6A3P12111 AC098592.2-201ENST00000413158 265 ntBASIC0.34□□□□□ -2.36
COL6A3P12111 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC0.34□□□□□ -2.36
COL6A3P12111 AC087588.1-201ENST00000462203 316 ntBASIC0.34□□□□□ -2.36
COL6A3P12111 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC0.34□□□□□ -2.36
COL6A3P12111 SNORA31.18-201ENST00000517043 134 ntBASIC0.34□□□□□ -2.36
COL6A3P12111 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.34□□□□□ -2.36
COL6A3P12111 AC025594.3-201ENST00000613068 790 ntBASIC0.34□□□□□ -2.36
COL6A3P12111 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC0.34□□□□□ -2.36
COL6A3P12111 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
COL6A3P12111 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC0.33□□□□□ -2.36
COL6A3P12111 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC0.33□□□□□ -2.36
COL6A3P12111 OR5AK1P-201ENST00000524837 922 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 AC093023.1-201ENST00000547375 507 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 AC139769.3-201ENST00000618383 175 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 AP003072.4-201ENST00000624580 310 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 RNU2-64P-201ENST00000411315 191 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 MTCO3P45-201ENST00000443036 613 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 RPL21P103-201ENST00000479921 488 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC0.33□□□□□ -2.36
COL6A3P12111 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC0.33□□□□□ -2.36
COL6A3P12111 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
COL6A3P12111 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC0.33□□□□□ -2.36
COL6A3P12111 RNU6-1072P-201ENST00000384703 107 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 RNU6-443P-201ENST00000384780 107 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 MIR10B-201ENST00000385011 110 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 HNRNPDP2-201ENST00000406475 478 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC0.33□□□□□ -2.36
COL6A3P12111 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC0.33□□□□□ -2.36
COL6A3P12111 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC0.33□□□□□ -2.36
COL6A3P12111 RPL23AP33-201ENST00000442301 452 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC0.33□□□□□ -2.36
COL6A3P12111 RPL31P20-201ENST00000449593 360 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 MTATP6P7-201ENST00000453315 681 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 AC108157.1-201ENST00000510511 539 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 RNU6-943P-201ENST00000516960 98 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC0.33□□□□□ -2.36
COL6A3P12111 MTCYBP41-201ENST00000528913 1123 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.33□□□□□ -2.36
COL6A3P12111 RPL30P11-203ENST00000598995 310 ntBASIC0.33□□□□□ -2.36
COL6A3P12111 RNU6-654P-201ENST00000364373 107 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 RPL7P30-201ENST00000420888 709 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC0.32□□□□□ -2.36
COL6A3P12111 RNF2P1-201ENST00000442955 1010 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 AC087879.1-201ENST00000474343 374 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 AC055731.1-201ENST00000474387 401 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC0.32□□□□□ -2.36
COL6A3P12111 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.32□□□□□ -2.36
COL6A3P12111 AL590705.4-201ENST00000532209 134 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 MIR4529-201ENST00000578110 78 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 AC090616.3-201ENST00000582184 217 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC0.32□□□□□ -2.36
COL6A3P12111 HSPE1P7-201ENST00000604681 321 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 AC135507.1-201ENST00000607214 561 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 AL138880.2-201ENST00000616214 239 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 AC008147.4-201ENST00000617570 1204 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC0.32□□□□□ -2.36
COL6A3P12111 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC0.32□□□□□ -2.36
COL6A3P12111 DYNLT3P2-201ENST00000442517 295 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 AC012213.4-201ENST00000606457 354 ntBASIC0.32□□□□□ -2.36
COL6A3P12111 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC0.32□□□□□ -2.36
COL6A3P12111 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC0.32□□□□□ -2.36
COL6A3P12111 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC0.32□□□□□ -2.36
COL6A3P12111 SNORA25.3-201ENST00000363205 127 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 Y_RNA.186-201ENST00000363899 92 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 SNORA25.8-201ENST00000364831 128 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 MIR493-201ENST00000385254 89 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 AL031577.2-201ENST00000404133 280 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 AL034374.1-201ENST00000406329 351 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 AL513475.1-201ENST00000406602 315 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.31□□□□□ -2.36
COL6A3P12111 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC0.31□□□□□ -2.36
COL6A3P12111 AC093770.1-201ENST00000511559 571 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 AC022690.1-201ENST00000526681 550 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 AP003049.1-201ENST00000529418 457 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 AC115085.1-201ENST00000588924 229 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 RNU6-10P-201ENST00000384036 107 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 RNU6-15P-201ENST00000384534 107 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 MT-TQ-201ENST00000387372 72 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 NDUFB4P10-201ENST00000452541 359 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 AC021146.2-201ENST00000504736 556 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 AC105914.1-201ENST00000511798 226 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 AGGF1P5-201ENST00000567900 919 ntBASIC0.31□□□□□ -2.36
COL6A3P12111 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms