Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 DLEU2_5.1-201ENST00000615567 84 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 AC007792.1-201ENST00000623023 402 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.19□□□□□ -1.74
COL6A1P12109 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.19□□□□□ -1.74
COL6A1P12109 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.19□□□□□ -1.74
COL6A1P12109 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.19□□□□□ -1.74
COL6A1P12109 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.19□□□□□ -1.74
COL6A1P12109 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 CUL1P1-201ENST00000509510 2425 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL6A1P12109 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.18□□□□□ -1.74
COL6A1P12109 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL6A1P12109 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.18□□□□□ -1.74
COL6A1P12109 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL6A1P12109 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL6A1P12109 RNY1P14-201ENST00000384426 108 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 RNU6-505P-201ENST00000384427 107 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 MT-TG-201ENST00000387429 68 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.18□□□□□ -1.74
COL6A1P12109 AC004552.1-201ENST00000419089 348 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC4.18□□□□□ -1.74
COL6A1P12109 RNU7-170P-201ENST00000459303 61 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 RPS26P3-201ENST00000470205 348 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 AC090543.2-201ENST00000483963 348 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 AC108860.1-201ENST00000484521 383 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 AC004057.1-201ENST00000485827 348 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 MTND4LP22-201ENST00000508209 276 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 AC096745.1-201ENST00000509945 370 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 AL359273.1-201ENST00000510918 627 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC4.18□□□□□ -1.74
COL6A1P12109 RNU6-470P-201ENST00000515954 104 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 AP006587.4-201ENST00000526053 529 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.18□□□□□ -1.74
COL6A1P12109 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.18□□□□□ -1.74
COL6A1P12109 AC012493.2-201ENST00000595083 291 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC4.18□□□□□ -1.74
COL6A1P12109 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.18□□□□□ -1.74
COL6A1P12109 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL6A1P12109 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.18□□□□□ -1.74
COL6A1P12109 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A1P12109 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A1P12109 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A1P12109 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
COL6A1P12109 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.17□□□□□ -1.74
COL6A1P12109 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL6A1P12109 SNORD62.1-201ENST00000362541 86 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 SNORD9-201ENST00000362566 104 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 Y_RNA.428-201ENST00000384078 102 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 Y_RNA.455-201ENST00000384230 98 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 AL139039.1-201ENST00000401900 692 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.17□□□□□ -1.74
COL6A1P12109 SSXP9-201ENST00000417503 292 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 NUP35P1-201ENST00000422734 947 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 AL590632.1-201ENST00000424289 371 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.17□□□□□ -1.74
COL6A1P12109 RPL7P37-201ENST00000425095 738 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 USMG5P1-201ENST00000425964 177 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.17□□□□□ -1.74
COL6A1P12109 AL669831.1-202ENST00000428504 417 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 AL359672.1-201ENST00000442302 409 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 AC008264.1-201ENST00000447612 367 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 RNA5SP310-201ENST00000459084 116 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 RNU6-953P-201ENST00000459154 107 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 RPL37P6-201ENST00000460682 294 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 AC117503.1-201ENST00000472241 394 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.17□□□□□ -1.74
COL6A1P12109 Y_RNA.670-201ENST00000516255 105 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 RN7SKP60-201ENST00000516985 239 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.17□□□□□ -1.74
COL6A1P12109 AC073539.2-201ENST00000597113 165 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.17□□□□□ -1.74
COL6A1P12109 AC006077.1-201ENST00000604746 343 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 PRR13P7-201ENST00000605538 430 ntBASIC4.17□□□□□ -1.74
COL6A1P12109 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.17□□□□□ -1.74
COL6A1P12109 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.17□□□□□ -1.74
COL6A1P12109 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
COL6A1P12109 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A1P12109 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC4.16□□□□□ -1.74
COL6A1P12109 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A1P12109 Y_RNA.188-201ENST00000363952 111 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4.16□□□□□ -1.74
COL6A1P12109 Y_RNA.404-201ENST00000383978 102 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 MIR135A2-201ENST00000384854 100 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 RPS4XP7-201ENST00000406274 780 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 MIR1290-201ENST00000408735 78 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 HMGB3P2-201ENST00000411913 584 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 Z99755.1-201ENST00000414048 380 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 AC080125.1-201ENST00000414888 684 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 AC114482.1-201ENST00000418010 247 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 AC093151.1-201ENST00000427711 313 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 CBX3P6-201ENST00000430257 527 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 HLA-N-201ENST00000437516 135 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 HIGD1AP11-201ENST00000438361 280 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 UBE2DNL-203ENST00000474922 222 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 SNORD116.3-201ENST00000517176 78 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL6A1P12109 GNAI2P1-201ENST00000541815 315 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 AC005899.2-201ENST00000584353 90 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 AC067852.3-201ENST00000589177 561 ntBASIC4.16□□□□□ -1.74
COL6A1P12109 AL137849.1-201ENST00000604767 169 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms