Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.76□□□□□ -1.81
HMGB1P09429 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HMGB1P09429 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HMGB1P09429 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HMGB1P09429 RNU1-91P-201ENST00000364746 163 ntBASIC3.75□□□□□ -1.81
HMGB1P09429 AL357075.1-201ENST00000404107 726 ntBASIC3.75□□□□□ -1.81
HMGB1P09429 RPS4XP7-201ENST00000406274 780 ntBASIC3.75□□□□□ -1.81
HMGB1P09429 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.75□□□□□ -1.81
HMGB1P09429 AL360221.1-201ENST00000445989 335 ntBASIC3.75□□□□□ -1.81
HMGB1P09429 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.75□□□□□ -1.81
HMGB1P09429 AC109925.1-201ENST00000478069 331 ntBASIC3.75□□□□□ -1.81
HMGB1P09429 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.75□□□□□ -1.81
HMGB1P09429 AC079382.1-201ENST00000493346 557 ntBASIC3.75□□□□□ -1.81
HMGB1P09429 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.75□□□□□ -1.81
HMGB1P09429 AL121917.1-203ENST00000605534 577 ntBASIC3.75□□□□□ -1.81
HMGB1P09429 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HMGB1P09429 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.74□□□□□ -1.81
HMGB1P09429 SNORD56.1-201ENST00000362913 68 ntBASIC3.74□□□□□ -1.81
HMGB1P09429 Y_RNA.359-201ENST00000365498 102 ntBASIC3.74□□□□□ -1.81
HMGB1P09429 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.74□□□□□ -1.81
HMGB1P09429 RNU1-57P-201ENST00000384491 166 ntBASIC3.74□□□□□ -1.81
HMGB1P09429 RPL21P3-201ENST00000395517 478 ntBASIC3.74□□□□□ -1.81
HMGB1P09429 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.74□□□□□ -1.81
HMGB1P09429 RN7SKP158-201ENST00000410453 326 ntBASIC3.74□□□□□ -1.81
HMGB1P09429 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.74□□□□□ -1.81
HMGB1P09429 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.74□□□□□ -1.81
HMGB1P09429 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.74□□□□□ -1.81
HMGB1P09429 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.74□□□□□ -1.81
HMGB1P09429 CYP2C59P-201ENST00000457790 269 ntBASIC3.74□□□□□ -1.81
HMGB1P09429 FTH1P2-201ENST00000466086 412 ntBASIC3.74□□□□□ -1.81
HMGB1P09429 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.74□□□□□ -1.81
HMGB1P09429 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.74□□□□□ -1.81
HMGB1P09429 RPL30P11-203ENST00000598995 310 ntBASIC3.74□□□□□ -1.81
HMGB1P09429 SNORD14A-201ENST00000606526 91 ntBASIC3.74□□□□□ -1.81
HMGB1P09429 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.74□□□□□ -1.81
HMGB1P09429 RMST_4.1-201ENST00000616886 107 ntBASIC3.74□□□□□ -1.81
HMGB1P09429 AL031601.2-202ENST00000622650 282 ntBASIC3.74□□□□□ -1.81
HMGB1P09429 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.74□□□□□ -1.81
HMGB1P09429 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
HMGB1P09429 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
HMGB1P09429 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HMGB1P09429 RNU1-72P-201ENST00000362976 153 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 RNA5SP72-201ENST00000364442 117 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 SNORA67.1-201ENST00000364749 141 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 RNU5E-7P-201ENST00000365290 117 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 RNA5SP240-201ENST00000365355 128 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 RNU6-607P-201ENST00000411283 108 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.73□□□□□ -1.81
HMGB1P09429 MTATP6P18-201ENST00000417994 673 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.73□□□□□ -1.81
HMGB1P09429 AC005326.1-201ENST00000429197 123 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.73□□□□□ -1.81
HMGB1P09429 Z75741.1-201ENST00000446793 314 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.73□□□□□ -1.81
HMGB1P09429 AC092436.1-201ENST00000506450 503 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 RPL37P25-201ENST00000507308 276 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 HMGB3P3-201ENST00000510526 400 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HMGB1P09429 AC068657.1-201ENST00000520807 306 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.73□□□□□ -1.81
HMGB1P09429 uc_338.11-201ENST00000619132 160 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.73□□□□□ -1.81
HMGB1P09429 MIR622-201ENST00000638396 96 ntBASIC3.73□□□□□ -1.81
HMGB1P09429 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.73□□□□□ -1.81
HMGB1P09429 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HMGB1P09429 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
HMGB1P09429 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HMGB1P09429 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
HMGB1P09429 HAUS6P2-201ENST00000433254 2404 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HMGB1P09429 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
HMGB1P09429 SNORA71.3-201ENST00000362582 128 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 U3.6-201ENST00000363622 211 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 RNU6-1032P-201ENST00000384100 107 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 SNORA7.4-201ENST00000384249 137 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.72□□□□□ -1.81
HMGB1P09429 AC007899.1-201ENST00000412776 775 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.72□□□□□ -1.81
HMGB1P09429 AC074117.2-201ENST00000417130 397 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.72□□□□□ -1.81
HMGB1P09429 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.72□□□□□ -1.81
HMGB1P09429 AC006028.1-201ENST00000438379 402 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 RPS3AP17-201ENST00000472594 777 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 RPS29P2-201ENST00000479278 136 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 RN7SL499P-201ENST00000481141 276 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.72□□□□□ -1.81
HMGB1P09429 SNORA31.23-201ENST00000517219 133 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.72□□□□□ -1.81
HMGB1P09429 AL627309.6-201ENST00000606857 840 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 uc_338.15-201ENST00000615470 191 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 ZNF680P1-201ENST00000436625 1469 ntBASIC3.72□□□□□ -1.81
HMGB1P09429 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.71□□□□□ -1.82
HMGB1P09429 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.71□□□□□ -1.82
HMGB1P09429 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
HMGB1P09429 RNU6-1120P-201ENST00000362988 108 ntBASIC3.71□□□□□ -1.82
HMGB1P09429 RNU6-1303P-201ENST00000364841 107 ntBASIC3.71□□□□□ -1.82
HMGB1P09429 RNA5SP267-201ENST00000364893 126 ntBASIC3.71□□□□□ -1.82
HMGB1P09429 SNORD116-9-201ENST00000384000 95 ntBASIC3.71□□□□□ -1.82
HMGB1P09429 SNORD116-3-201ENST00000384287 95 ntBASIC3.71□□□□□ -1.82
HMGB1P09429 SNORD116-7-201ENST00000384404 95 ntBASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms