Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC116562.3-201ENST00000506136 177 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 MRPS36P2-201ENST00000512569 299 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 RNU6-123P-201ENST00000516163 102 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AC009902.1-201ENST00000519351 183 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AC068587.5-201ENST00000528506 175 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AC087683.1-201ENST00000591187 441 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AC068790.2-201ENST00000602601 557 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 NRBF2P5-201ENST00000603087 788 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AC073648.5-201ENST00000603502 305 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AC136475.10-201ENST00000620253 385 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 MIR6852-201ENST00000621699 66 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AC025034.2-201ENST00000623264 286 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 ELF2P3-201ENST00000445099 1506 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 RNU6-1097P-201ENST00000363586 107 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 Y_RNA.194-201ENST00000363985 102 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 Y_RNA.436-201ENST00000384097 102 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AL139039.1-201ENST00000401900 692 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AL663109.1-201ENST00000411498 844 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 BPY2DP-201ENST00000422208 265 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 HMGB1P9-201ENST00000429856 646 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 VN1R108P-201ENST00000431580 830 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AC011816.1-201ENST00000441346 546 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AC132479.1-201ENST00000449160 144 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AC107626.1-201ENST00000471084 183 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 RN7SL297P-201ENST00000483161 293 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 RBBP4P6-201ENST00000508098 202 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 MTND3P5-201ENST00000512798 333 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 RNU4-29P-201ENST00000515943 174 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 SNORD27.1-201ENST00000516319 72 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 RNU6-405P-201ENST00000516637 110 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 RPPH1-2P-201ENST00000516688 293 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 RNU6-143P-201ENST00000516942 93 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 RNU6-703P-201ENST00000516946 107 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 RNU6-1315P-201ENST00000517187 99 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 SCARNA11.3-201ENST00000517276 130 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AC243972.3-201ENST00000539655 198 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 MIR3616-201ENST00000584070 92 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AC007938.3-201ENST00000604965 623 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 Z84480.1-201ENST00000605131 311 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AL139286.2-201ENST00000606838 396 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AC103591.3-201ENST00000608684 209 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AC092608.2-201ENST00000624427 218 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 AL157786.1-207ENST00000627771 695 ntBASIC2.83□□□□□ -1.96
CPSF3Q9UKF6 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 RNU6-179P-201ENST00000363350 107 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 RNU6-461P-201ENST00000364195 107 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 RNU4-75P-201ENST00000364621 146 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 Y_RNA.318-201ENST00000365131 97 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 RNU6-456P-201ENST00000384493 107 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 Y_RNA.559-201ENST00000384686 107 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 MIR196B-201ENST00000384852 84 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AL356057.2-201ENST00000403318 432 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 RPL19P1-201ENST00000411635 428 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 NDUFS5P4-201ENST00000412983 318 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 RPL26P27-201ENST00000414397 437 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AC080125.1-201ENST00000414888 684 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AL031779.1-201ENST00000415663 330 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AC096649.2-201ENST00000416186 393 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 RPS15AP5-201ENST00000436276 388 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 RPS3P1-201ENST00000456781 192 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 RPL23AP70-201ENST00000483361 460 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AC091133.4-201ENST00000511142 308 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AC009063.1-201ENST00000563342 702 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AC008521.1-201ENST00000587471 187 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 OR1M4P-201ENST00000589199 287 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AL022154.1-201ENST00000604698 785 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AL158032.1-201ENST00000605401 106 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AL359547.2-201ENST00000615810 418 ntBASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CPSF3Q9UKF6 AC135776.4-201ENST00000624300 1904 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 193.7 ms