Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AP004247.1-201ENST00000531556 1289 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC1.09□□□□□ -2.24
SCN3AQ9NY46 AC006199.1-201ENST00000548728 219 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 AL132857.1-201ENST00000555180 708 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 AL121821.2-201ENST00000556081 394 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 MTCYBP22-201ENST00000603788 447 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 AC009237.15-201ENST00000610252 501 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 AC091812.1-201ENST00000432235 1948 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.09□□□□□ -2.24
SCN3AQ9NY46 RNU6-549P-201ENST00000384433 107 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 ELOCP14-201ENST00000428070 331 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 ELOCP7-201ENST00000439968 331 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AL691517.1-201ENST00000440833 1235 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 OFD1P7Y-201ENST00000454643 1155 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 snoU109.1-201ENST00000459339 135 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 ATP5EP1-201ENST00000510257 156 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.08□□□□□ -2.24
SCN3AQ9NY46 RNA5SP102-201ENST00000516865 106 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC1.08□□□□□ -2.24
SCN3AQ9NY46 CBX3P7-201ENST00000532876 502 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AC008269.2-201ENST00000561915 1105 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AC091057.3-201ENST00000602684 733 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AC120349.2-201ENST00000625002 298 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SCN3AQ9NY46 Y_RNA.354-201ENST00000365448 111 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 RNU6-114P-201ENST00000384704 105 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 MIR758-201ENST00000390227 88 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AL590084.2-201ENST00000401481 382 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AL161449.1-201ENST00000414531 1199 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC1.08□□□□□ -2.24
SCN3AQ9NY46 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.08□□□□□ -2.24
SCN3AQ9NY46 FABP5P14-201ENST00000437273 393 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 RNU1-98P-201ENST00000458992 160 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AC092436.3-201ENST00000511788 257 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AC021739.1-201ENST00000559631 174 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.08□□□□□ -2.24
SCN3AQ9NY46 BNIP3P25-201ENST00000596023 559 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AC092953.2-201ENST00000608000 699 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 DUSP12P1-201ENST00000612874 516 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 MIR5739-201ENST00000619803 80 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AL445264.1-201ENST00000621719 171 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AC231657.1-201ENST00000624313 397 ntBASIC1.08□□□□□ -2.24
SCN3AQ9NY46 AC107982.1-201ENST00000507171 1300 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
SCN3AQ9NY46 RNU4-38P-201ENST00000364472 129 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 RNU6-468P-201ENST00000384003 109 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 RNU6-637P-201ENST00000384050 107 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 Y_RNA.540-201ENST00000384638 111 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 AC127391.1-201ENST00000411737 98 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 ZNF736P7Y-201ENST00000425158 820 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 RPL30P4-201ENST00000429309 333 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.07□□□□□ -2.24
SCN3AQ9NY46 AC009238.1-201ENST00000442165 424 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 AC009237.6-201ENST00000446969 424 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 RN7SKP179-201ENST00000516126 217 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 RNU6-581P-201ENST00000516214 105 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 MTND5P35-201ENST00000557537 1720 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 AL512347.1-201ENST00000566420 503 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 AC097655.1-201ENST00000635075 318 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 Z75746.1-201ENST00000440243 2080 ntBASIC1.07□□□□□ -2.24
SCN3AQ9NY46 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 RNU6-778P-201ENST00000363269 103 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 RPS6P15-201ENST00000431996 751 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 RSU1P2-202ENST00000437884 485 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AL158053.1-201ENST00000441503 453 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 GXYLT1P1-201ENST00000446657 490 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 MTND2P24-201ENST00000453434 806 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 RNU7-136P-201ENST00000458819 69 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC004223.1-201ENST00000479840 271 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC091965.2-201ENST00000512324 613 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC110760.3-202ENST00000515177 371 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 RNU6-714P-201ENST00000516963 103 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 RNU6-1261P-201ENST00000517194 104 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC079148.1-201ENST00000565944 819 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC090615.1-201ENST00000577519 154 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC026271.5-201ENST00000577873 130 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AL357080.1-201ENST00000617394 239 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC008121.3-201ENST00000618726 433 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 RNU6-1300P-201ENST00000391046 108 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 RPL21P1-201ENST00000399532 476 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 SDAD1P3-201ENST00000427380 333 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms