Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AL121821.2-201ENST00000556081 394 ntBASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 AC009063.1-201ENST00000563342 702 ntBASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 AC008751.2-201ENST00000597885 980 ntBASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 AC091152.3-201ENST00000604227 325 ntBASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 AP000240.1-201ENST00000609910 452 ntBASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 AC103710.2-201ENST00000609912 942 ntBASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 Z99571.1-201ENST00000636677 394 ntBASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 U6.99-201ENST00000637524 83 ntBASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 AC010149.2-201ENST00000637608 315 ntBASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.8□□□□□ -2.12
EXOSC4Q9NPD3 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 RNY4P24-201ENST00000362735 96 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 RNU6-533P-201ENST00000384144 107 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 MIR17-201ENST00000385012 84 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 MIR634-201ENST00000385208 97 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 SNORA46.1-201ENST00000391069 153 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC092809.3-201ENST00000415453 231 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 RPS15AP12-201ENST00000419498 388 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 RPS3AP44-201ENST00000425466 790 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AL353777.1-201ENST00000425552 326 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AL365184.2-201ENST00000431139 435 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AL161651.1-201ENST00000440882 223 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 GPM6BP3-201ENST00000442797 145 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC124916.1-201ENST00000444020 547 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 MTND2P14-201ENST00000482139 351 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 MTND1P3-201ENST00000484956 952 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 RPL39P36-201ENST00000490784 156 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 RNU6-678P-201ENST00000516832 109 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 RNU6-201P-201ENST00000517100 61 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 FAM92A1P1-201ENST00000528023 890 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AP003181.2-201ENST00000528941 181 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC091489.2-201ENST00000566263 604 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC008749.1-201ENST00000597650 306 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 MTCYBP22-201ENST00000603788 447 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC130324.3-201ENST00000614165 542 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC027807.2-201ENST00000616099 408 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC104010.1-201ENST00000616889 150 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC024581.2-201ENST00000619986 252 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AP002791.1-201ENST00000623291 381 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 IGHVIII-44-202ENST00000636235 289 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC092104.1-201ENST00000497346 1441 ntBASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC1.79□□□□□ -2.12
EXOSC4Q9NPD3 AC104454.1-201ENST00000421341 1401 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 RNU5F-6P-201ENST00000362979 116 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 RNU6-511P-201ENST00000363496 107 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 SNORA4.3-201ENST00000365564 137 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 U6atac.2-201ENST00000408644 118 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 RNU2-62P-201ENST00000410868 191 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 RPL23AP39-201ENST00000415533 405 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC010099.3-201ENST00000423896 409 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 BX276092.3-201ENST00000424182 230 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 Z98742.2-201ENST00000431564 187 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 MTCYBP39-201ENST00000437562 491 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AL008629.1-201ENST00000438615 184 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AL512286.1-201ENST00000439244 400 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 MTND5P2-201ENST00000442927 1142 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 EPS15P1-201ENST00000448836 336 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 PSPHP1-201ENST00000450062 261 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 ZNF114P1-201ENST00000453500 292 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 SSXP1-201ENST00000453640 473 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC008526.1-201ENST00000509149 338 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AF213884.2-201ENST00000510417 903 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 RNU6-1183P-201ENST00000517054 60 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AP002770.2-201ENST00000543613 532 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 MTND1P24-201ENST00000552175 861 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 RPS3AP4-201ENST00000555161 764 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC026464.5-201ENST00000562497 722 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 MIR4672-201ENST00000583126 81 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 MIR4765-201ENST00000585007 77 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 BNIP3P9-201ENST00000603714 553 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC121334.2-201ENST00000605387 271 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AL355816.2-201ENST00000610049 647 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 AC011939.3-201ENST00000613686 466 ntBASIC1.78□□□□□ -2.12
EXOSC4Q9NPD3 uc_338.12-201ENST00000616344 181 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms