Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.79□□□□□ -2.12
USP42Q9H9J4 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
USP42Q9H9J4 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.79□□□□□ -2.12
USP42Q9H9J4 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC1.79□□□□□ -2.12
USP42Q9H9J4 MTCYBP16-201ENST00000509187 1129 ntBASIC1.79□□□□□ -2.12
USP42Q9H9J4 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC1.79□□□□□ -2.12
USP42Q9H9J4 AC087897.1-201ENST00000550134 156 ntBASIC1.79□□□□□ -2.12
USP42Q9H9J4 AC022202.1-201ENST00000613515 211 ntBASIC1.79□□□□□ -2.12
USP42Q9H9J4 U4atac.1-201ENST00000618345 95 ntBASIC1.79□□□□□ -2.12
USP42Q9H9J4 AL109620.1-201ENST00000618738 1197 ntBASIC1.79□□□□□ -2.12
USP42Q9H9J4 U2.21-201ENST00000637295 81 ntBASIC1.79□□□□□ -2.12
USP42Q9H9J4 Z75746.1-201ENST00000440243 2080 ntBASIC1.79□□□□□ -2.12
USP42Q9H9J4 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 OR4G1P-203ENST00000641984 1631 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 U8.1-201ENST00000362843 134 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 RNU6-1167P-201ENST00000363227 94 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 Y_RNA.578-201ENST00000390903 88 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 RPS24P7-201ENST00000416921 246 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 XKRYP1-201ENST00000423438 492 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 AIMP1P2-201ENST00000425294 312 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 GPM6BP2-201ENST00000432046 144 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 RPL36AP53-201ENST00000432891 316 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 XKRYP2-201ENST00000432915 492 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 GPM6BP1-201ENST00000446387 144 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 MTND1P31-201ENST00000449206 961 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 RPL36AP48-201ENST00000485521 314 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 MRPS33P3-201ENST00000513456 322 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 RNU6-581P-201ENST00000516214 105 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 RNY4P37-201ENST00000516225 96 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 AC104072.1-201ENST00000568817 668 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 DPPA3P3-201ENST00000603842 430 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 AC069545.1-201ENST00000605671 358 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 MIR6078-201ENST00000611069 100 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 MIR5739-201ENST00000619803 80 ntBASIC1.78□□□□□ -2.12
USP42Q9H9J4 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.78□□□□□ -2.12
USP42Q9H9J4 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
USP42Q9H9J4 RNU1-22P-201ENST00000363334 158 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 RNU6-236P-201ENST00000363886 106 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC068533.2-201ENST00000411872 306 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 DNAJA1P2-201ENST00000421360 1197 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 PTGES3P4-201ENST00000426243 356 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 MTND5P14-201ENST00000441481 1267 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC1.77□□□□□ -2.13
USP42Q9H9J4 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC1.77□□□□□ -2.13
USP42Q9H9J4 AL441985.1-201ENST00000457727 251 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC013267.1-201ENST00000458227 267 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC093801.2-201ENST00000503966 1050 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC110760.3-202ENST00000515177 371 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 SNORA4.4-201ENST00000515921 135 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC107953.1-201ENST00000522216 297 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 AP003049.1-201ENST00000529418 457 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC023825.1-201ENST00000566704 1030 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC090079.2-201ENST00000575289 768 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC073544.2-201ENST00000601155 540 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC099785.1-201ENST00000605697 437 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 AL627230.6-201ENST00000611129 280 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC008759.3-201ENST00000613300 508 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC011939.3-201ENST00000613686 466 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 MTND5P10-201ENST00000603719 1809 ntBASIC1.77□□□□□ -2.13
USP42Q9H9J4 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.77□□□□□ -2.13
USP42Q9H9J4 Y_RNA.408-201ENST00000383987 102 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 AL512604.1-201ENST00000404812 257 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 AL160275.3-201ENST00000423876 471 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 MTCO3P45-201ENST00000443036 613 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 RPS29P29-201ENST00000456396 171 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 HMGB3P17-201ENST00000504195 649 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 RNU6-927P-201ENST00000516199 100 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 SNORA31.23-201ENST00000517219 133 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 DEFB130C-202ENST00000530001 230 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 AC084364.2-201ENST00000546924 395 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 AC023813.2-201ENST00000564321 469 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 AP005136.1-201ENST00000579765 429 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms