Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.45□□□□□ -2.02
LIME1Q9H400 AC017083.3-201ENST00000609955 700 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.45□□□□□ -2.02
LIME1Q9H400 AL512643.1-201ENST00000635735 524 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.45□□□□□ -2.02
LIME1Q9H400 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.45□□□□□ -2.02
LIME1Q9H400 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
LIME1Q9H400 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
LIME1Q9H400 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.45□□□□□ -2.02
LIME1Q9H400 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
LIME1Q9H400 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
LIME1Q9H400 RPL9P7-201ENST00000330965 580 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
LIME1Q9H400 Y_RNA.1-201ENST00000352915 104 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 SNORA62.1-201ENST00000364287 154 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 SNORA75B-201ENST00000384053 137 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 MIR301A-201ENST00000385261 86 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 RNU4-55P-201ENST00000410731 137 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 EEF1A1P40-201ENST00000412883 573 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 OR51A5P-201ENST00000415429 942 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 AL353193.1-201ENST00000421444 268 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 BPY2DP-201ENST00000422208 265 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 AL160275.3-201ENST00000423876 471 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 BRK1P2-201ENST00000442875 223 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 DPPA3P1-201ENST00000448050 469 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.44□□□□□ -2.02
LIME1Q9H400 NIPA2P5-201ENST00000452282 464 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.44□□□□□ -2.02
LIME1Q9H400 RPL26P9-201ENST00000457466 433 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 RPL9P33-201ENST00000484311 566 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 RPL9P6-201ENST00000492764 598 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.44□□□□□ -2.02
LIME1Q9H400 RBBP4P6-201ENST00000508098 202 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 AC010493.1-201ENST00000513479 292 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 RNU6-237P-201ENST00000515985 71 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 SNORA31.26-201ENST00000517250 137 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 AC022634.1-201ENST00000520765 532 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.44□□□□□ -2.02
LIME1Q9H400 FAM92A1P1-201ENST00000528023 890 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 AP003034.1-201ENST00000534621 422 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 ADI1P3-201ENST00000549509 470 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.44□□□□□ -2.02
LIME1Q9H400 HMGN2P15-201ENST00000585707 270 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.44□□□□□ -2.02
LIME1Q9H400 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.44□□□□□ -2.02
LIME1Q9H400 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.44□□□□□ -2.02
LIME1Q9H400 AL590808.1-201ENST00000618696 141 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 AC073534.2-201ENST00000620377 381 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 AC011155.2-201ENST00000623202 216 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 OR5AK4P-201ENST00000635912 903 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.44□□□□□ -2.02
LIME1Q9H400 ZNF680P1-201ENST00000436625 1469 ntBASIC2.44□□□□□ -2.02
LIME1Q9H400 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
LIME1Q9H400 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
LIME1Q9H400 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
LIME1Q9H400 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.43□□□□□ -2.02
LIME1Q9H400 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.43□□□□□ -2.02
LIME1Q9H400 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.43□□□□□ -2.02
LIME1Q9H400 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.43□□□□□ -2.02
LIME1Q9H400 RNA5SP68-201ENST00000363885 119 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 SNORA4.3-201ENST00000365564 137 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 Y_RNA.517-201ENST00000384551 106 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.43□□□□□ -2.02
LIME1Q9H400 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.43□□□□□ -2.02
LIME1Q9H400 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
LIME1Q9H400 AC098614.2-201ENST00000426040 255 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.43□□□□□ -2.02
LIME1Q9H400 CALM2P2-201ENST00000428512 440 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.43□□□□□ -2.02
LIME1Q9H400 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.43□□□□□ -2.02
LIME1Q9H400 AC002486.1-201ENST00000435098 391 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AC098831.1-201ENST00000440661 216 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.43□□□□□ -2.02
LIME1Q9H400 AC003071.1-201ENST00000451219 789 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 FABP5P13-201ENST00000452144 328 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.43□□□□□ -2.02
LIME1Q9H400 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.43□□□□□ -2.02
LIME1Q9H400 RNU7-182P-201ENST00000459009 62 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.43□□□□□ -2.02
LIME1Q9H400 RPS29P20-201ENST00000489592 171 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.43□□□□□ -2.02
LIME1Q9H400 AC139453.3-201ENST00000493276 369 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AC079382.1-201ENST00000493346 557 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 ANXA2P1-201ENST00000505539 926 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.43□□□□□ -2.02
LIME1Q9H400 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.43□□□□□ -2.02
LIME1Q9H400 SUB1P1-201ENST00000524415 382 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 OR4R1P-201ENST00000529879 463 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 RANP3-201ENST00000530970 276 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AC022880.1-201ENST00000534017 973 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.43□□□□□ -2.02
LIME1Q9H400 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
LIME1Q9H400 MIR1273C-201ENST00000578669 77 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.43□□□□□ -2.02
LIME1Q9H400 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.43□□□□□ -2.02
LIME1Q9H400 AC004223.2-201ENST00000590309 544 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 Z84480.1-201ENST00000605131 311 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AP001330.5-201ENST00000607176 411 ntBASIC2.43□□□□□ -2.02
LIME1Q9H400 AC090115.4-201ENST00000609970 188 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms