Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SNORA75B-201ENST00000384053 137 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 MIR493-201ENST00000385254 89 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 RNU6-328P-201ENST00000390887 106 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 RNA5SP129-201ENST00000410276 118 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 UBE2D3P2-201ENST00000424409 445 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 MYL8P-204ENST00000431574 518 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.68□□□□□ -1.66
USP48Q86UV5 CECR9-201ENST00000453421 199 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.68□□□□□ -1.66
USP48Q86UV5 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.68□□□□□ -1.66
USP48Q86UV5 BTF3L4P4-201ENST00000506381 449 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.68□□□□□ -1.66
USP48Q86UV5 SMURF2P1-201ENST00000514992 481 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 Y_RNA.708-201ENST00000516950 96 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.68□□□□□ -1.66
USP48Q86UV5 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC4.68□□□□□ -1.66
USP48Q86UV5 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.68□□□□□ -1.66
USP48Q86UV5 ELOCP5-201ENST00000604924 333 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 MIR486-1-201ENST00000612171 68 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 AL132822.1-201ENST00000617063 513 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 7SK.10-201ENST00000621414 298 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.68□□□□□ -1.66
USP48Q86UV5 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USP48Q86UV5 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP48Q86UV5 LINC02471-203ENST00000641941 4752 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
USP48Q86UV5 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
USP48Q86UV5 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP48Q86UV5 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP48Q86UV5 Y_RNA.112-201ENST00000363250 102 ntBASIC4.67□□□□□ -1.66
USP48Q86UV5 RNU6-1329P-201ENST00000365664 107 ntBASIC4.67□□□□□ -1.66
USP48Q86UV5 RNU6-310P-201ENST00000384655 107 ntBASIC4.67□□□□□ -1.66
USP48Q86UV5 RNU6-907P-201ENST00000390924 102 ntBASIC4.67□□□□□ -1.66
USP48Q86UV5 SNORA48.2-201ENST00000390926 124 ntBASIC4.67□□□□□ -1.66
USP48Q86UV5 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.67□□□□□ -1.66
USP48Q86UV5 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC4.67□□□□□ -1.66
USP48Q86UV5 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.67□□□□□ -1.66
USP48Q86UV5 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.67□□□□□ -1.66
USP48Q86UV5 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.67□□□□□ -1.66
USP48Q86UV5 RPS29P2-201ENST00000479278 136 ntBASIC4.67□□□□□ -1.66
USP48Q86UV5 RPL21P13-201ENST00000488305 481 ntBASIC4.67□□□□□ -1.66
USP48Q86UV5 VWA8P1-201ENST00000510889 176 ntBASIC4.67□□□□□ -1.66
USP48Q86UV5 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC4.67□□□□□ -1.66
USP48Q86UV5 Y_RNA.720-201ENST00000517166 92 ntBASIC4.67□□□□□ -1.66
USP48Q86UV5 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC4.67□□□□□ -1.66
USP48Q86UV5 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.67□□□□□ -1.66
USP48Q86UV5 AC018462.2-201ENST00000605375 395 ntBASIC4.67□□□□□ -1.66
USP48Q86UV5 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.67□□□□□ -1.66
USP48Q86UV5 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.67□□□□□ -1.66
USP48Q86UV5 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.67□□□□□ -1.66
USP48Q86UV5 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP48Q86UV5 MTND4P1-201ENST00000457501 1466 ntBASIC4.67□□□□□ -1.66
USP48Q86UV5 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
USP48Q86UV5 MTND5P19-201ENST00000424872 1794 ntBASIC4.66□□□□□ -1.66
USP48Q86UV5 Y_RNA.5-201ENST00000362334 102 ntBASIC4.66□□□□□ -1.66
USP48Q86UV5 RNU6-1197P-201ENST00000391183 107 ntBASIC4.66□□□□□ -1.66
USP48Q86UV5 HIGD1AP11-201ENST00000438361 280 ntBASIC4.66□□□□□ -1.66
USP48Q86UV5 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.66□□□□□ -1.66
USP48Q86UV5 RPL21P23-201ENST00000446654 460 ntBASIC4.66□□□□□ -1.66
USP48Q86UV5 NDUFB1P2-201ENST00000449477 176 ntBASIC4.66□□□□□ -1.66
USP48Q86UV5 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.66□□□□□ -1.66
USP48Q86UV5 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.66□□□□□ -1.66
USP48Q86UV5 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.66□□□□□ -1.66
USP48Q86UV5 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.66□□□□□ -1.66
USP48Q86UV5 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.66□□□□□ -1.66
USP48Q86UV5 RNA5SP165-201ENST00000517142 115 ntBASIC4.66□□□□□ -1.66
USP48Q86UV5 RN7SKP57-201ENST00000517248 293 ntBASIC4.66□□□□□ -1.66
USP48Q86UV5 MIR4503-201ENST00000582187 83 ntBASIC4.66□□□□□ -1.66
USP48Q86UV5 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
USP48Q86UV5 AL161423.1-201ENST00000613700 262 ntBASIC4.66□□□□□ -1.66
USP48Q86UV5 AL078596.1-201ENST00000624856 447 ntBASIC4.66□□□□□ -1.66
USP48Q86UV5 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP48Q86UV5 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.66□□□□□ -1.66
USP48Q86UV5 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP48Q86UV5 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP48Q86UV5 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
USP48Q86UV5 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.66□□□□□ -1.66
USP48Q86UV5 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP48Q86UV5 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.65□□□□□ -1.66
USP48Q86UV5 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP48Q86UV5 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP48Q86UV5 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP48Q86UV5 UBE3AP2-201ENST00000429033 2259 ntBASIC4.65□□□□□ -1.66
USP48Q86UV5 IPO8P1-201ENST00000455509 3109 ntBASIC4.65□□□□□ -1.66
USP48Q86UV5 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP48Q86UV5 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.65□□□□□ -1.66
USP48Q86UV5 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
USP48Q86UV5 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
USP48Q86UV5 RNU6-1309P-201ENST00000363305 108 ntBASIC4.65□□□□□ -1.67
USP48Q86UV5 Y_RNA.148-201ENST00000363557 117 ntBASIC4.65□□□□□ -1.67
USP48Q86UV5 RNA5SP267-201ENST00000364893 126 ntBASIC4.65□□□□□ -1.67
USP48Q86UV5 DEFB109C-201ENST00000382575 264 ntBASIC4.65□□□□□ -1.67
USP48Q86UV5 DEFB109B-201ENST00000382656 264 ntBASIC4.65□□□□□ -1.67
USP48Q86UV5 RNU2-68P-201ENST00000410878 191 ntBASIC4.65□□□□□ -1.67
USP48Q86UV5 Y_RNA.646-201ENST00000410980 101 ntBASIC4.65□□□□□ -1.67
USP48Q86UV5 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.65□□□□□ -1.67
USP48Q86UV5 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.65□□□□□ -1.67
USP48Q86UV5 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.65□□□□□ -1.67
USP48Q86UV5 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.65□□□□□ -1.67
USP48Q86UV5 RPL21P11-201ENST00000461458 483 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms