Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.91□□□□□ -1.78
USP39Q53GS9 AC010655.1-201ENST00000449336 292 ntBASIC3.91□□□□□ -1.78
USP39Q53GS9 AC007967.1-201ENST00000455422 1159 ntBASIC3.91□□□□□ -1.78
USP39Q53GS9 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.91□□□□□ -1.78
USP39Q53GS9 SNRPGP3-201ENST00000469405 227 ntBASIC3.91□□□□□ -1.78
USP39Q53GS9 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.91□□□□□ -1.78
USP39Q53GS9 AC026801.1-201ENST00000497178 464 ntBASIC3.91□□□□□ -1.78
USP39Q53GS9 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.91□□□□□ -1.78
USP39Q53GS9 AC009901.1-201ENST00000506703 541 ntBASIC3.91□□□□□ -1.78
USP39Q53GS9 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.91□□□□□ -1.78
USP39Q53GS9 RN7SKP18-201ENST00000516005 275 ntBASIC3.91□□□□□ -1.78
USP39Q53GS9 SNORA74D-201ENST00000516404 141 ntBASIC3.91□□□□□ -1.78
USP39Q53GS9 RNA5SP164-201ENST00000516533 110 ntBASIC3.91□□□□□ -1.78
USP39Q53GS9 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.91□□□□□ -1.78
USP39Q53GS9 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
USP39Q53GS9 AP000889.1-201ENST00000530968 660 ntBASIC3.91□□□□□ -1.78
USP39Q53GS9 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.91□□□□□ -1.78
USP39Q53GS9 MIR4644-201ENST00000579929 84 ntBASIC3.91□□□□□ -1.78
USP39Q53GS9 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.91□□□□□ -1.78
USP39Q53GS9 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
USP39Q53GS9 USP8P1-201ENST00000494673 3183 ntBASIC3.91□□□□□ -1.78
USP39Q53GS9 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
USP39Q53GS9 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
USP39Q53GS9 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.9□□□□□ -1.78
USP39Q53GS9 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
USP39Q53GS9 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
USP39Q53GS9 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.9□□□□□ -1.78
USP39Q53GS9 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.9□□□□□ -1.78
USP39Q53GS9 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
USP39Q53GS9 Y_RNA.2-201ENST00000362330 96 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 SNORA23-201ENST00000365128 182 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 RNU6-637P-201ENST00000384050 107 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 U1.1-201ENST00000384101 164 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 MT-TW-201ENST00000387382 68 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 MIR1252-201ENST00000408861 65 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.9□□□□□ -1.79
USP39Q53GS9 PGBD4P6-201ENST00000421501 610 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.9□□□□□ -1.79
USP39Q53GS9 CHEK2P4-201ENST00000450340 246 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 RNU6-1132P-201ENST00000459214 107 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AC008571.1-201ENST00000467232 300 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 RN7SL293P-201ENST00000481765 281 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AC106707.2-201ENST00000484182 374 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AC074250.1-201ENST00000511117 192 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
USP39Q53GS9 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
USP39Q53GS9 AC026371.1-201ENST00000551867 419 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AC022968.1-201ENST00000567372 442 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 MIR5187-201ENST00000583479 76 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AL670379.6-201ENST00000603753 252 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.9□□□□□ -1.79
USP39Q53GS9 AL670379.1-201ENST00000604752 252 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 IGHV3-29-201ENST00000604817 344 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AL670379.5-201ENST00000605253 252 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AL670379.8-201ENST00000605353 252 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AL670379.7-201ENST00000605823 252 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AL355810.1-201ENST00000614629 552 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 SNHG22-203ENST00000617833 660 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AC141273.2-201ENST00000618989 130 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 AF127577.6-201ENST00000623352 2191 ntBASIC3.9□□□□□ -1.79
USP39Q53GS9 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
USP39Q53GS9 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
USP39Q53GS9 AL137003.2-201ENST00000606924 2538 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.89□□□□□ -1.79
USP39Q53GS9 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
USP39Q53GS9 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.89□□□□□ -1.79
USP39Q53GS9 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
USP39Q53GS9 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
USP39Q53GS9 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
USP39Q53GS9 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.89□□□□□ -1.79
USP39Q53GS9 Y_RNA.222-201ENST00000364264 102 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 Y_RNA.288-201ENST00000364854 92 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 Y_RNA.350-201ENST00000365409 98 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
USP39Q53GS9 MIR183-201ENST00000384958 110 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.89□□□□□ -1.79
USP39Q53GS9 UBE2FP1-201ENST00000416536 447 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 AC244098.2-201ENST00000422068 99 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 AL158071.1-201ENST00000430315 461 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.89□□□□□ -1.79
USP39Q53GS9 AC099799.1-201ENST00000439809 192 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 AL359672.1-201ENST00000442302 409 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.89□□□□□ -1.79
USP39Q53GS9 CYCSP35-201ENST00000451978 304 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 SNORD127-201ENST00000458892 86 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 RPS23P3-201ENST00000470993 430 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 AC114801.2-201ENST00000503825 781 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 AC096745.1-201ENST00000509945 370 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 AC104619.4-201ENST00000510773 249 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 SCARNA13-201ENST00000516672 275 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 CYCSP27-201ENST00000527643 293 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
USP39Q53GS9 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.89□□□□□ -1.79
USP39Q53GS9 AC007375.1-201ENST00000554513 578 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 GNRHR2P1-201ENST00000555315 631 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.89□□□□□ -1.79
USP39Q53GS9 SUB1P3-201ENST00000564581 315 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.89□□□□□ -1.79
USP39Q53GS9 AC007566.2-201ENST00000603642 413 ntBASIC3.89□□□□□ -1.79
USP39Q53GS9 Z98751.3-201ENST00000604447 521 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 155.9 ms