Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AP000867.2-201ENST00000532468 320 ntBASIC3.11□□□□□ -1.91
USP41Q3LFD5 AL512310.1-201ENST00000548639 172 ntBASIC3.11□□□□□ -1.91
USP41Q3LFD5 AMZ2P1-203ENST00000565833 850 ntBASIC3.11□□□□□ -1.91
USP41Q3LFD5 MIR4703-201ENST00000577728 79 ntBASIC3.11□□□□□ -1.91
USP41Q3LFD5 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
USP41Q3LFD5 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.11□□□□□ -1.91
USP41Q3LFD5 AP003465.2-201ENST00000602571 373 ntBASIC3.11□□□□□ -1.91
USP41Q3LFD5 AC025165.5-201ENST00000602802 578 ntBASIC3.11□□□□□ -1.91
USP41Q3LFD5 AC107304.1-201ENST00000604229 296 ntBASIC3.11□□□□□ -1.91
USP41Q3LFD5 AC008945.2-201ENST00000606056 604 ntBASIC3.11□□□□□ -1.91
USP41Q3LFD5 AC073308.1-201ENST00000623696 305 ntBASIC3.11□□□□□ -1.91
USP41Q3LFD5 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.11□□□□□ -1.91
USP41Q3LFD5 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.11□□□□□ -1.91
USP41Q3LFD5 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP41Q3LFD5 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP41Q3LFD5 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP41Q3LFD5 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC006020.1-201ENST00000420179 1854 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 SNORA69-201ENST00000383895 132 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 RNU6-217P-201ENST00000384164 104 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 MIR301A-201ENST00000385261 86 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 RNU6-550P-201ENST00000391057 101 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 RNU6ATAC25P-201ENST00000408798 117 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 RNU2-68P-201ENST00000410878 191 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 RNA5SP184-201ENST00000411071 108 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 USP9YP27-201ENST00000418455 438 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 AL160275.3-201ENST00000423876 471 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 USP9YP18-201ENST00000425912 695 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC087499.2-201ENST00000432861 149 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 UBE2V1P8-201ENST00000437166 265 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 snoU13.28-201ENST00000459235 104 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 RPL21P8-201ENST00000465083 535 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 GMFBP1-201ENST00000467831 427 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 AL121769.1-201ENST00000469473 401 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 AL163973.1-201ENST00000484753 577 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 RPL36AP51-201ENST00000487216 318 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC117522.3-201ENST00000507974 584 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC098591.2-201ENST00000510152 315 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC011352.1-201ENST00000512300 793 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 MTND4LP26-201ENST00000518144 282 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 HMGB1P14-201ENST00000557424 591 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.1□□□□□ -1.91
USP41Q3LFD5 MIR4319-201ENST00000577285 85 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC024153.1-201ENST00000603103 365 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 ATP1B3P1-201ENST00000605365 821 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 AC004832.5-201ENST00000608677 401 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 AP001486.3-201ENST00000615334 372 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 U6atac.1-201ENST00000616025 117 ntBASIC3.1□□□□□ -1.91
USP41Q3LFD5 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP41Q3LFD5 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP41Q3LFD5 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP41Q3LFD5 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP41Q3LFD5 Y_RNA.255-201ENST00000364581 97 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 SNORA14A-201ENST00000364773 135 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 Y_RNA.402-201ENST00000383972 102 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 Y_RNA.450-201ENST00000384198 113 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 SNORD37.1-201ENST00000390968 65 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 SAR1AP2-201ENST00000392696 594 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 BTF3P7-201ENST00000407097 488 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 RNU2-29P-201ENST00000410423 189 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC245054.2-201ENST00000415639 319 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC099548.1-201ENST00000421443 426 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 MTCO1P20-201ENST00000425366 358 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC104058.1-201ENST00000448028 297 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC073415.1-201ENST00000449240 153 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC139453.3-201ENST00000493276 369 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 RNA5SP401-201ENST00000515920 127 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 RN7SKP219-201ENST00000516825 296 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.09□□□□□ -1.91
USP41Q3LFD5 CYCSP39-201ENST00000565821 309 ntBASIC3.09□□□□□ -1.91
USP41Q3LFD5 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms