Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.88□□□□□ -2.27
FOXA3P55318 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
FOXA3P55318 RNU1-58P-201ENST00000362413 163 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 Y_RNA.234-201ENST00000364409 97 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 RNU6-481P-201ENST00000384194 107 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 RNU6-549P-201ENST00000384433 107 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
FOXA3P55318 RPL37P10-201ENST00000412884 288 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 TAF13P2-201ENST00000416876 286 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 AL139421.1-201ENST00000423010 169 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 AC092648.1-201ENST00000425870 423 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC0.88□□□□□ -2.27
FOXA3P55318 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.88□□□□□ -2.27
FOXA3P55318 snoU13.15-201ENST00000459407 104 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 AL121594.1-201ENST00000475906 575 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC0.88□□□□□ -2.27
FOXA3P55318 AC011005.2-201ENST00000487324 359 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 AC139453.3-201ENST00000493276 369 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC0.88□□□□□ -2.27
FOXA3P55318 AC008628.1-201ENST00000508663 265 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 AC025465.3-201ENST00000510570 311 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC0.88□□□□□ -2.27
FOXA3P55318 MTND5P13-201ENST00000513046 1079 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC0.88□□□□□ -2.27
FOXA3P55318 AP005660.1-201ENST00000522972 293 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.88□□□□□ -2.27
FOXA3P55318 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC0.88□□□□□ -2.27
FOXA3P55318 AC009268.2-201ENST00000621925 457 ntBASIC0.88□□□□□ -2.27
FOXA3P55318 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
FOXA3P55318 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
FOXA3P55318 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.88□□□□□ -2.27
FOXA3P55318 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC0.87□□□□□ -2.27
FOXA3P55318 CBX3P1-201ENST00000325243 554 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 RNU6-1167P-201ENST00000363227 94 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 RNU6-353P-201ENST00000364266 108 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 RNU6-359P-201ENST00000365466 108 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 RNU6-611P-201ENST00000384276 104 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 MIR1262-201ENST00000408276 93 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 MRPL35P3-201ENST00000421557 364 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC0.87□□□□□ -2.27
FOXA3P55318 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC0.87□□□□□ -2.27
FOXA3P55318 GXYLT1P1-201ENST00000446657 490 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC0.87□□□□□ -2.27
FOXA3P55318 SNORD97-201ENST00000459187 142 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 MEMO1P3-201ENST00000459811 302 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 OR2A41P-201ENST00000473586 105 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC0.87□□□□□ -2.27
FOXA3P55318 TMEM251P1-201ENST00000503717 318 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 AC109927.2-201ENST00000506416 303 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 RNU6-581P-201ENST00000516214 105 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 RNU6-586P-201ENST00000517265 104 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 AP000873.5-201ENST00000533906 236 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 AP000763.2-201ENST00000540641 163 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC0.87□□□□□ -2.27
FOXA3P55318 AC005668.1-201ENST00000571142 476 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 AC103987.3-201ENST00000582071 292 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.87□□□□□ -2.27
FOXA3P55318 AC091057.3-201ENST00000602684 733 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 BBIP1P1-201ENST00000602999 279 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 AC073413.2-201ENST00000604332 360 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 AC009237.15-201ENST00000610252 501 ntBASIC0.87□□□□□ -2.27
FOXA3P55318 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
FOXA3P55318 NACAP2-201ENST00000318548 624 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 RNU6-439P-201ENST00000384188 106 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 SNORA48.1-201ENST00000390879 135 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 RNU6-754P-201ENST00000391166 107 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 AL590084.2-201ENST00000401481 382 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 MIR1289-2-201ENST00000408360 111 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 RNA5SP100-201ENST00000410903 110 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 RNA5SP59-201ENST00000410922 110 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 OR6C66P-201ENST00000414917 930 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 LUZP4P1-201ENST00000415420 344 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 BTF3L4P3-201ENST00000418879 476 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 CR848007.2-201ENST00000424918 787 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.86□□□□□ -2.27
FOXA3P55318 RPL36AP53-201ENST00000432891 316 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 USP9YP22-201ENST00000438971 294 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 AC092427.1-201ENST00000439177 601 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC0.86□□□□□ -2.27
FOXA3P55318 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.86□□□□□ -2.27
FOXA3P55318 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC0.86□□□□□ -2.27
FOXA3P55318 MTCYBP16-201ENST00000509187 1129 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 RNU1-92P-201ENST00000517017 135 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 ACA59.2-201ENST00000517061 156 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.86□□□□□ -2.27
FOXA3P55318 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC0.86□□□□□ -2.27
FOXA3P55318 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.86□□□□□ -2.27
FOXA3P55318 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC0.86□□□□□ -2.27
FOXA3P55318 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC0.86□□□□□ -2.27
FOXA3P55318 AC103810.9-201ENST00000606688 112 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 AL022345.1-201ENST00000607292 135 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 AL355802.3-201ENST00000607571 545 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 AC097468.3-201ENST00000607956 456 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.86□□□□□ -2.27
FOXA3P55318 AC019226.1-201ENST00000625666 515 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 MIR1322-201ENST00000638013 71 ntBASIC0.86□□□□□ -2.27
FOXA3P55318 ZNF209P-201ENST00000593450 2304 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms