Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A4P53420 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
COL4A4P53420 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC2.27□□□□□ -2.05
COL4A4P53420 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
COL4A4P53420 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
COL4A4P53420 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL4A4P53420 CDR1-202ENST00000625883 1485 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
COL4A4P53420 AL139276.1-201ENST00000311910 1001 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 SNRPEP3-201ENST00000338402 276 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.26□□□□□ -2.05
COL4A4P53420 Y_RNA.356-201ENST00000365475 113 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 RNU6-452P-201ENST00000384406 107 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 SNORA26.9-201ENST00000391322 122 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 TMSB4XP8-201ENST00000402089 135 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 RNA5SP239-201ENST00000410218 129 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 RNA5SP181-201ENST00000410246 98 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 TMSB4XP6-201ENST00000415187 135 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
COL4A4P53420 TMSB4XP1-201ENST00000424567 135 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 RPL7P29-201ENST00000437151 728 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 USP9YP12-201ENST00000450481 570 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 AC243772.1-201ENST00000451620 410 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 Z82190.1-201ENST00000454534 490 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.26□□□□□ -2.05
COL4A4P53420 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.26□□□□□ -2.05
COL4A4P53420 RNA5SP216-201ENST00000516111 123 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 RNY4P37-201ENST00000516225 96 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.26□□□□□ -2.05
COL4A4P53420 AP003385.6-201ENST00000531603 374 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 AC126177.3-201ENST00000551839 688 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 MIR3682-201ENST00000581338 84 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 AL136363.1-201ENST00000605349 337 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 AL359821.1-201ENST00000605519 182 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 AL162730.1-201ENST00000605734 292 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 AL121655.1-201ENST00000605811 308 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.26□□□□□ -2.05
COL4A4P53420 AC116447.1-201ENST00000613153 453 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 AC009268.2-201ENST00000621925 457 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 AL160413.1-201ENST00000622780 310 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 ZNF271P-202ENST00000465539 1970 ntBASIC2.26□□□□□ -2.05
COL4A4P53420 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL4A4P53420 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL4A4P53420 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL4A4P53420 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.25□□□□□ -2.05
COL4A4P53420 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
COL4A4P53420 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
COL4A4P53420 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
COL4A4P53420 RNU4-7P-201ENST00000364758 141 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 RNY4P34-201ENST00000364779 95 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 RNU6-1122P-201ENST00000384449 107 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 MIR1303-201ENST00000408625 86 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 CYCSP49-201ENST00000420810 319 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC2.25□□□□□ -2.05
COL4A4P53420 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 AC092757.1-201ENST00000467293 467 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 HMGN1P13-201ENST00000505795 138 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 Y_RNA.693-201ENST00000516641 110 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 RNU7-30P-201ENST00000516835 62 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 Y_RNA.704-201ENST00000516851 102 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.25□□□□□ -2.05
COL4A4P53420 SLC2A13P1-201ENST00000531560 322 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.25□□□□□ -2.05
COL4A4P53420 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 AC034268.2-201ENST00000571784 482 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 MIR3167-201ENST00000579623 85 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 SNORA4-201ENST00000584302 138 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AC060780.3-201ENST00000589464 80 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AL596327.1-201ENST00000603629 213 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AC091488.1-201ENST00000604239 660 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AC007363.1-201ENST00000604736 620 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AC106900.2-201ENST00000604994 317 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 AL359198.2-201ENST00000611836 194 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 AL353746.1-201ENST00000566293 6881 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 MTND4P27-201ENST00000450813 1354 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A4P53420 MTCO1P14-201ENST00000441695 1559 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC2.25□□□□□ -2.05
COL4A4P53420 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.25□□□□□ -2.05
COL4A4P53420 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.25□□□□□ -2.05
COL4A4P53420 Y_RNA.25-201ENST00000362528 102 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 Y_RNA.58-201ENST00000362807 102 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 Y_RNA.154-201ENST00000363624 102 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 RNY3P3-201ENST00000363816 102 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 RNY3P1-201ENST00000365085 102 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 SNORD81.2-201ENST00000365153 76 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 RNY3-201ENST00000365484 102 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 Y_RNA.490-201ENST00000384413 102 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 MIR583-201ENST00000384846 75 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 MIR606-201ENST00000384851 96 ntBASIC2.25□□□□□ -2.05
COL4A4P53420 RNU6-195P-201ENST00000411352 109 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms