Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 OR5BM1P-201ENST00000512021 366 ntBASIC1.54□□□□□ -2.16
COL5A3P25940 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.54□□□□□ -2.16
COL5A3P25940 DEFB108D-201ENST00000527787 222 ntBASIC1.54□□□□□ -2.16
COL5A3P25940 AP003461.1-201ENST00000528866 78 ntBASIC1.54□□□□□ -2.16
COL5A3P25940 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC1.54□□□□□ -2.16
COL5A3P25940 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.54□□□□□ -2.16
COL5A3P25940 MIR3921-201ENST00000577308 85 ntBASIC1.54□□□□□ -2.16
COL5A3P25940 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.54□□□□□ -2.16
COL5A3P25940 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC1.54□□□□□ -2.16
COL5A3P25940 AC073413.2-201ENST00000604332 360 ntBASIC1.54□□□□□ -2.16
COL5A3P25940 AC023158.2-201ENST00000614876 543 ntBASIC1.54□□□□□ -2.16
COL5A3P25940 MIR1322-201ENST00000638013 71 ntBASIC1.54□□□□□ -2.16
COL5A3P25940 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC1.53□□□□□ -2.16
COL5A3P25940 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
COL5A3P25940 MIR222-201ENST00000384992 110 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 MIR513B-201ENST00000385136 84 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 RPS4XP3-201ENST00000398541 413 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC1.53□□□□□ -2.16
COL5A3P25940 HIGD1AP15-201ENST00000416198 280 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC1.53□□□□□ -2.16
COL5A3P25940 UBE2D3P2-201ENST00000424409 445 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.53□□□□□ -2.16
COL5A3P25940 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC1.53□□□□□ -2.16
COL5A3P25940 AL136380.1-201ENST00000447970 162 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 AL133217.1-201ENST00000450980 425 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 AC234775.1-201ENST00000454247 670 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 Z82190.1-201ENST00000454534 490 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.53□□□□□ -2.16
COL5A3P25940 AC087343.1-201ENST00000477341 475 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
COL5A3P25940 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
COL5A3P25940 HMGB1P28-201ENST00000507778 552 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 RNY4P37-201ENST00000516225 96 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 RNU6-1282P-201ENST00000516735 96 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC1.53□□□□□ -2.16
COL5A3P25940 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.53□□□□□ -2.16
COL5A3P25940 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.53□□□□□ -2.16
COL5A3P25940 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.53□□□□□ -2.16
COL5A3P25940 FAM106DP-201ENST00000586416 501 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 AC245036.5-201ENST00000596330 847 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 AL139418.1-201ENST00000613613 177 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 AC009159.2-201ENST00000617603 606 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 AC012640.5-201ENST00000623897 319 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
COL5A3P25940 AL356473.1-201ENST00000406203 1408 ntBASIC1.53□□□□□ -2.16
COL5A3P25940 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.53□□□□□ -2.17
COL5A3P25940 RNU6-289P-201ENST00000364093 107 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AL008987.1-201ENST00000415528 237 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 MTCO2P5-201ENST00000422621 426 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 XKRYP1-201ENST00000423438 492 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AC007742.1-201ENST00000425789 329 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.52□□□□□ -2.17
COL5A3P25940 XKRYP2-201ENST00000432915 492 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 MTND1P32-201ENST00000433043 938 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 ELOCP26-201ENST00000436067 329 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 MTND1P26-201ENST00000440488 538 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 MTND1P31-201ENST00000449206 961 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 FO393415.2-201ENST00000480085 343 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 MTND2P14-201ENST00000482139 351 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.52□□□□□ -2.17
COL5A3P25940 SNORA3.4-201ENST00000515969 96 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC1.52□□□□□ -2.17
COL5A3P25940 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC1.52□□□□□ -2.17
COL5A3P25940 DUXAP1-201ENST00000556632 463 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.52□□□□□ -2.17
COL5A3P25940 AC093424.1-201ENST00000604999 338 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AC112220.3-201ENST00000605502 502 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AC009090.3-201ENST00000616553 565 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AC110079.1-202ENST00000635213 138 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.52□□□□□ -2.17
COL5A3P25940 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.52□□□□□ -2.17
COL5A3P25940 Y_RNA.68-201ENST00000362881 102 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 RNU4-91P-201ENST00000364778 135 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 MIR520E-201ENST00000384867 87 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 MTCYBP38-201ENST00000417160 1123 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.52□□□□□ -2.17
COL5A3P25940 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC1.52□□□□□ -2.17
COL5A3P25940 RPL27AP8-201ENST00000424277 446 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.52□□□□□ -2.17
COL5A3P25940 THAP5P1-201ENST00000439089 262 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC1.52□□□□□ -2.17
COL5A3P25940 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.52□□□□□ -2.17
COL5A3P25940 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.52□□□□□ -2.17
COL5A3P25940 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC1.52□□□□□ -2.17
COL5A3P25940 RNU7-136P-201ENST00000458819 69 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 MEMO1P3-201ENST00000459811 302 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AC026410.2-201ENST00000460281 156 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.52□□□□□ -2.17
COL5A3P25940 RPL31P60-201ENST00000478450 367 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 TMEM251P1-201ENST00000503717 318 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC1.52□□□□□ -2.17
COL5A3P25940 CBX3P3-201ENST00000508108 532 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 RNA5SP471-201ENST00000516971 106 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 RNA5SP337-201ENST00000517007 109 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC1.52□□□□□ -2.17
COL5A3P25940 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC1.52□□□□□ -2.17
COL5A3P25940 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC1.52□□□□□ -2.17
COL5A3P25940 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC1.52□□□□□ -2.17
COL5A3P25940 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.52□□□□□ -2.17
COL5A3P25940 DUXAP11-201ENST00000603858 526 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms