Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC093648.1-201ENST00000623546 606 ntBASIC2.29□□□□□ -2.04
SDC1P18827 CU459211.1-201ENST00000635667 749 ntBASIC2.29□□□□□ -2.04
SDC1P18827 U6.99-201ENST00000637524 83 ntBASIC2.29□□□□□ -2.04
SDC1P18827 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
SDC1P18827 ADAM3A-203ENST00000461344 2157 ntBASIC2.29□□□□□ -2.04
SDC1P18827 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
SDC1P18827 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.28□□□□□ -2.04
SDC1P18827 SNORA68.1-201ENST00000364537 132 ntBASIC2.28□□□□□ -2.04
SDC1P18827 RN7SKP226-201ENST00000364912 300 ntBASIC2.28□□□□□ -2.04
SDC1P18827 RNU6-282P-201ENST00000365357 103 ntBASIC2.28□□□□□ -2.04
SDC1P18827 Y_RNA.367-201ENST00000365544 101 ntBASIC2.28□□□□□ -2.04
SDC1P18827 SNORA75-201ENST00000384158 137 ntBASIC2.28□□□□□ -2.04
SDC1P18827 MIR196B-201ENST00000384852 84 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AL356057.2-201ENST00000403318 432 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.28□□□□□ -2.04
SDC1P18827 AL031779.1-201ENST00000415663 330 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AC096649.2-201ENST00000416186 393 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.28□□□□□ -2.04
SDC1P18827 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.28□□□□□ -2.04
SDC1P18827 RPL23AP83-201ENST00000434984 473 ntBASIC2.28□□□□□ -2.04
SDC1P18827 MTCO2P16-201ENST00000436962 677 ntBASIC2.28□□□□□ -2.04
SDC1P18827 KATNBL1P3-201ENST00000443475 909 ntBASIC2.28□□□□□ -2.04
SDC1P18827 DPPA3P1-201ENST00000448050 469 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
SDC1P18827 AC079448.1-201ENST00000449377 373 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AL109933.2-201ENST00000452651 260 ntBASIC2.28□□□□□ -2.04
SDC1P18827 RPS3P1-201ENST00000456781 192 ntBASIC2.28□□□□□ -2.04
SDC1P18827 RNU6-956P-201ENST00000458868 103 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AC026801.1-201ENST00000497178 464 ntBASIC2.28□□□□□ -2.04
SDC1P18827 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AC010424.1-201ENST00000506336 297 ntBASIC2.28□□□□□ -2.04
SDC1P18827 ARL2BPP4-201ENST00000506854 471 ntBASIC2.28□□□□□ -2.04
SDC1P18827 RBBP4P6-201ENST00000508098 202 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.28□□□□□ -2.04
SDC1P18827 AC022447.1-201ENST00000515358 464 ntBASIC2.28□□□□□ -2.04
SDC1P18827 SNORA31.19-201ENST00000517079 126 ntBASIC2.28□□□□□ -2.04
SDC1P18827 RN7SKP40-201ENST00000517211 242 ntBASIC2.28□□□□□ -2.04
SDC1P18827 MTCYBP20-201ENST00000524239 1129 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AP003072.2-201ENST00000527756 676 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.28□□□□□ -2.04
SDC1P18827 MIR1273C-201ENST00000578669 77 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AC090616.3-201ENST00000582184 217 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.28□□□□□ -2.04
SDC1P18827 AC245014.2-201ENST00000603689 287 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AC246785.4-201ENST00000605374 287 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AL139286.2-201ENST00000606838 396 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AC135507.1-201ENST00000607214 561 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AC126118.1-201ENST00000607744 628 ntBASIC2.28□□□□□ -2.04
SDC1P18827 AC025034.2-201ENST00000623264 286 ntBASIC2.28□□□□□ -2.04
SDC1P18827 MIR1291-201ENST00000627649 87 ntBASIC2.28□□□□□ -2.04
SDC1P18827 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
SDC1P18827 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
SDC1P18827 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.28□□□□□ -2.04
SDC1P18827 AC016717.2-201ENST00000609089 5141 ntBASIC2.28□□□□□ -2.04
SDC1P18827 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.28□□□□□ -2.05
SDC1P18827 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
SDC1P18827 Y_RNA.33-201ENST00000362591 102 ntBASIC2.27□□□□□ -2.05
SDC1P18827 SET-203ENST00000372688 801 ntTSL 2 BASIC2.27□□□□□ -2.05
SDC1P18827 SNORD116-2-201ENST00000384274 95 ntBASIC2.27□□□□□ -2.05
SDC1P18827 SNORD116-1-201ENST00000384335 95 ntBASIC2.27□□□□□ -2.05
SDC1P18827 Y_RNA.553-201ENST00000384670 102 ntBASIC2.27□□□□□ -2.05
SDC1P18827 SNORD116-6-201ENST00000384711 96 ntBASIC2.27□□□□□ -2.05
SDC1P18827 MIR483-201ENST00000385070 76 ntBASIC2.27□□□□□ -2.05
SDC1P18827 SNORA40C-201ENST00000391285 128 ntBASIC2.27□□□□□ -2.05
SDC1P18827 CISD1P1-201ENST00000393907 327 ntBASIC2.27□□□□□ -2.05
SDC1P18827 RNA5SP184-201ENST00000411071 108 ntBASIC2.27□□□□□ -2.05
SDC1P18827 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.27□□□□□ -2.05
SDC1P18827 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.27□□□□□ -2.05
SDC1P18827 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
SDC1P18827 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.27□□□□□ -2.05
SDC1P18827 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.27□□□□□ -2.05
SDC1P18827 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.27□□□□□ -2.05
SDC1P18827 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.27□□□□□ -2.05
SDC1P18827 GPR143P-201ENST00000434155 205 ntBASIC2.27□□□□□ -2.05
SDC1P18827 RPS15AP7-201ENST00000439294 405 ntBASIC2.27□□□□□ -2.05
SDC1P18827 MTCO1P19-201ENST00000443487 500 ntBASIC2.27□□□□□ -2.05
SDC1P18827 AC233279.1-201ENST00000455300 423 ntBASIC2.27□□□□□ -2.05
SDC1P18827 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
SDC1P18827 RPL31P3-201ENST00000458430 332 ntBASIC2.27□□□□□ -2.05
SDC1P18827 KLF3P2-201ENST00000465138 268 ntBASIC2.27□□□□□ -2.05
SDC1P18827 RPL23AP70-201ENST00000483361 460 ntBASIC2.27□□□□□ -2.05
SDC1P18827 AC116562.3-201ENST00000506136 177 ntBASIC2.27□□□□□ -2.05
SDC1P18827 RPL37P25-201ENST00000507308 276 ntBASIC2.27□□□□□ -2.05
SDC1P18827 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.27□□□□□ -2.05
SDC1P18827 RPPH1-2P-201ENST00000516688 293 ntBASIC2.27□□□□□ -2.05
SDC1P18827 RNU6-410P-201ENST00000517006 107 ntBASIC2.27□□□□□ -2.05
SDC1P18827 AC068587.5-201ENST00000528506 175 ntBASIC2.27□□□□□ -2.05
SDC1P18827 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
SDC1P18827 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
SDC1P18827 ADI1P3-201ENST00000549509 470 ntBASIC2.27□□□□□ -2.05
SDC1P18827 AC078814.3-201ENST00000553036 491 ntBASIC2.27□□□□□ -2.05
SDC1P18827 AL121821.2-201ENST00000556081 394 ntBASIC2.27□□□□□ -2.05
SDC1P18827 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.27□□□□□ -2.05
SDC1P18827 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.27□□□□□ -2.05
SDC1P18827 AC012213.3-201ENST00000577199 777 ntBASIC2.27□□□□□ -2.05
SDC1P18827 MIR4528-201ENST00000577763 90 ntBASIC2.27□□□□□ -2.05
SDC1P18827 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.27□□□□□ -2.05
SDC1P18827 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.27□□□□□ -2.05
SDC1P18827 AC008521.1-201ENST00000587471 187 ntBASIC2.27□□□□□ -2.05
SDC1P18827 RSL24D1P11-201ENST00000591045 491 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 157.3 ms