Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.59□□□□□ -2.31
HMGN4O00479 RAB11AP2-201ENST00000545905 639 ntBASIC0.59□□□□□ -2.31
HMGN4O00479 AC125611.1-201ENST00000549563 229 ntBASIC0.59□□□□□ -2.31
HMGN4O00479 AC090115.3-201ENST00000553218 849 ntBASIC0.59□□□□□ -2.31
HMGN4O00479 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC0.59□□□□□ -2.31
HMGN4O00479 AC109446.2-201ENST00000567872 497 ntBASIC0.59□□□□□ -2.31
HMGN4O00479 AC012414.6-201ENST00000568241 401 ntBASIC0.59□□□□□ -2.31
HMGN4O00479 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.59□□□□□ -2.31
HMGN4O00479 WISP1-OT1-201ENST00000602893 642 ntBASIC0.59□□□□□ -2.31
HMGN4O00479 AP005229.2-201ENST00000609980 697 ntBASIC0.59□□□□□ -2.31
HMGN4O00479 AL355472.4-201ENST00000610233 626 ntBASIC0.59□□□□□ -2.31
HMGN4O00479 AC083865.1-201ENST00000636634 831 ntBASIC0.59□□□□□ -2.31
HMGN4O00479 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.59□□□□□ -2.32
HMGN4O00479 AC068700.1-201ENST00000565862 3754 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 AL121978.1-201ENST00000402778 359 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 RNA5SP100-201ENST00000410903 110 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 RNA5SP59-201ENST00000410922 110 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 AC078974.1-201ENST00000411597 223 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 AC097463.2-201ENST00000421074 142 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 CST2P1-201ENST00000425770 87 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 RPL31P54-201ENST00000429803 370 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC0.58□□□□□ -2.32
HMGN4O00479 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC0.58□□□□□ -2.32
HMGN4O00479 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC0.58□□□□□ -2.32
HMGN4O00479 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.58□□□□□ -2.32
HMGN4O00479 MTCYBP16-201ENST00000509187 1129 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 AC025465.3-201ENST00000510570 311 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 RNA5SP404-201ENST00000517118 132 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC0.58□□□□□ -2.32
HMGN4O00479 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC0.58□□□□□ -2.32
HMGN4O00479 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.58□□□□□ -2.32
HMGN4O00479 AL590095.2-201ENST00000604136 117 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 ELOCP5-201ENST00000604924 333 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
HMGN4O00479 AC012676.2-201ENST00000619258 186 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC0.58□□□□□ -2.32
HMGN4O00479 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 AC009950.2-201ENST00000636548 183 ntBASIC0.58□□□□□ -2.32
HMGN4O00479 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.58□□□□□ -2.32
HMGN4O00479 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
HMGN4O00479 OR5T3-201ENST00000303059 1023 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
HMGN4O00479 RNU5E-1-201ENST00000362477 120 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 RNA5SP327-201ENST00000362494 101 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 RNU1-23P-201ENST00000363361 144 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
HMGN4O00479 RNU6-1222P-201ENST00000384615 107 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 MIR508-201ENST00000384857 115 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 MIR597-201ENST00000384968 97 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.57□□□□□ -2.32
HMGN4O00479 RPS27P16-201ENST00000425758 201 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 ISCA1P6-201ENST00000427740 390 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 RPL7P34-201ENST00000433316 712 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC0.57□□□□□ -2.32
HMGN4O00479 MTCO1P44-201ENST00000441935 243 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC0.57□□□□□ -2.32
HMGN4O00479 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.57□□□□□ -2.32
HMGN4O00479 COX7A2P2-201ENST00000505291 250 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC0.57□□□□□ -2.32
HMGN4O00479 RNA5SP384-201ENST00000516615 116 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 CYCSP27-201ENST00000527643 293 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.57□□□□□ -2.32
HMGN4O00479 AC004812.1-201ENST00000540773 146 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
HMGN4O00479 AC002400.1-201ENST00000569310 726 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 AC004067.1-201ENST00000608733 700 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC0.57□□□□□ -2.32
HMGN4O00479 SEC63P2-201ENST00000503863 1939 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC0.57□□□□□ -2.32
HMGN4O00479 MTCO1P23-201ENST00000415223 1526 ntBASIC0.57□□□□□ -2.32
HMGN4O00479 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.56□□□□□ -2.32
HMGN4O00479 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.56□□□□□ -2.32
HMGN4O00479 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
HMGN4O00479 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC0.56□□□□□ -2.32
HMGN4O00479 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.56□□□□□ -2.32
HMGN4O00479 SKA2P1-201ENST00000425592 390 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 MTCYBP32-201ENST00000427945 1084 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC0.56□□□□□ -2.32
HMGN4O00479 AC245047.4-201ENST00000433189 144 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.56□□□□□ -2.32
HMGN4O00479 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC0.56□□□□□ -2.32
HMGN4O00479 AL161651.1-201ENST00000440882 223 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
HMGN4O00479 SRP72-202ENST00000504757 745 ntTSL 2 BASIC0.56□□□□□ -2.32
HMGN4O00479 AC109927.2-201ENST00000506416 303 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 COPS8P3-201ENST00000526024 482 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 CENPUP1-201ENST00000526649 1202 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
HMGN4O00479 CYP3A137P-201ENST00000562436 69 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 AC090079.2-201ENST00000575289 768 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 MIR3167-201ENST00000579623 85 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 VN1R88P-201ENST00000596787 292 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 AL713866.2-201ENST00000603579 219 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 AC136443.5-201ENST00000603741 370 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 CYP2C61P-201ENST00000604072 290 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 AF129408.1-201ENST00000608767 431 ntBASIC0.56□□□□□ -2.32
HMGN4O00479 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.56□□□□□ -2.32
HMGN4O00479 AC091965.5-201ENST00000624785 342 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms