Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 RNA5SP269-201ENST00000459032 137 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AL160314.1-201ENST00000490836 438 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AC107222.1-201ENST00000510899 637 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 RNU6-1092P-201ENST00000516955 87 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AC137800.2-201ENST00000574375 120 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AL158827.2-201ENST00000602494 330 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 RN7SKP299-201ENST00000606679 301 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AC034102.8-201ENST00000615146 484 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AL138880.2-201ENST00000616214 239 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AL359757.2-201ENST00000624309 274 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AL691447.3-201ENST00000635020 330 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AC110079.1-202ENST00000635213 138 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 PSMD5-AS1-215ENST00000640622 205 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 AL390237.1-201ENST00000404226 1415 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 CR848007.1-201ENST00000442354 1699 ntBASIC1.8□□□□□ -2.12
TRAV40A0A0B4J280 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 Y_RNA.245-201ENST00000364493 95 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 RNU4-75P-201ENST00000364621 146 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 SNORA20.2-201ENST00000383922 131 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 SNORD116-9-201ENST00000384000 95 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 SNORA75B-201ENST00000384053 137 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 SNORD116-3-201ENST00000384287 95 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 SNORD116-7-201ENST00000384404 95 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 SNORD116-5-201ENST00000384462 95 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 RPS12P24-201ENST00000412619 387 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AL031779.1-201ENST00000415663 330 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 ZNF90P2-204ENST00000419323 1075 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 MTCO2P34-201ENST00000421994 607 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 ZNF863P-201ENST00000426746 417 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC104651.1-201ENST00000427559 735 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 MTATP6P16-201ENST00000434543 526 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AL353706.1-201ENST00000436728 494 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 SNRPEP9-201ENST00000436794 238 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 MTND4P25-201ENST00000441039 533 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC009296.1-201ENST00000443146 155 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 RNU6-956P-201ENST00000458868 103 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 MRPS17P3-201ENST00000465453 385 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 RPS27P26-201ENST00000494583 239 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC009901.1-201ENST00000506703 541 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 RBBP4P6-201ENST00000508098 202 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 MTCO3P28-201ENST00000513351 515 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 Y_RNA.689-201ENST00000516589 107 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC090572.1-201ENST00000519251 160 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC012213.3-201ENST00000577199 777 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 MTND1P15-201ENST00000579262 949 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AL359999.1-201ENST00000604513 294 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC245008.1-201ENST00000608123 476 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC008498.1-201ENST00000613012 531 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 AC090582.1-201ENST00000636321 199 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 Z99571.1-201ENST00000636677 394 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 U2.21-201ENST00000637295 81 ntBASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
TRAV40A0A0B4J280 MIRLET7G-201ENST00000362280 84 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 RNU6-778P-201ENST00000363269 103 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 OR5H15-201ENST00000383696 930 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 SNORA24.1-201ENST00000384401 135 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 SNORA64-201ENST00000384674 134 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 MIR1-2-201ENST00000384961 85 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 MIR504-201ENST00000385065 83 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 MRPL42P2-201ENST00000403169 426 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 AL591416.1-201ENST00000404015 867 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 RNU6ATAC16P-201ENST00000408591 138 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 RNU2-49P-201ENST00000410666 184 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 RNU2-62P-201ENST00000410868 191 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 AC006366.1-201ENST00000422002 759 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 ISCA1P1-201ENST00000426679 387 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 AL590383.1-201ENST00000428602 75 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 AL589823.1-201ENST00000429577 183 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 USP9YP14-201ENST00000430663 563 ntBASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC1.78□□□□□ -2.12
TRAV40A0A0B4J280 ARPC3P1-201ENST00000437218 533 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms