Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.19□□□□□ -1.9
SNX9Q9Y5X1 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 RNU6-799P-201ENST00000363567 107 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 SNORA51.4-201ENST00000364993 124 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 RNU6-1029P-201ENST00000384109 107 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 Y_RNA.576-201ENST00000384781 102 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 RN7SKP140-201ENST00000411196 284 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AC245054.2-201ENST00000415639 319 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AC091390.3-201ENST00000426478 338 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AC008850.1-201ENST00000427546 362 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 RPL36AP53-201ENST00000432891 316 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 CALM1P1-201ENST00000442082 433 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 MTND1P18-201ENST00000448191 573 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AL162395.1-201ENST00000457882 422 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 RNU6-390P-201ENST00000516259 103 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 SNORA70.16-201ENST00000516390 95 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 OR5AL2P-201ENST00000532185 920 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AL121579.1-201ENST00000555129 305 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AC008521.1-201ENST00000587471 187 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 DPPA3P3-201ENST00000603842 430 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AC008945.2-201ENST00000606056 604 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AC093732.2-201ENST00000607950 274 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 DISC2.1-201ENST00000612827 205 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AC025034.2-201ENST00000623264 286 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 AL354685.2-201ENST00000448218 1447 ntBASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.18□□□□□ -1.9
SNX9Q9Y5X1 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 SDAD1P2-201ENST00000441308 2028 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AC091564.4-201ENST00000533934 2194 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 DEFB108F-201ENST00000344638 222 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 RNU6-179P-201ENST00000363350 107 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 RNU6-1027P-201ENST00000383998 107 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 SNORA46-201ENST00000384762 135 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 NDUFB4P4-201ENST00000404822 243 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 EEF1A1P41-201ENST00000414667 207 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AL451054.2-201ENST00000420896 202 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 SRIP2-201ENST00000428470 166 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 MTND4P25-201ENST00000441039 533 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 RPL39P36-201ENST00000490784 156 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AC108078.2-201ENST00000510750 236 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 RNU6-685P-201ENST00000517088 95 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AC010653.1-201ENST00000571108 881 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 MIR4703-201ENST00000577728 79 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 MIR4424-201ENST00000585257 86 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AL365204.3-201ENST00000612448 685 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 U6.42-201ENST00000618440 107 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AL589994.2-201ENST00000621124 579 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AC007998.5-201ENST00000622938 237 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 MTND5P19-201ENST00000424872 1794 ntBASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.17□□□□□ -1.9
SNX9Q9Y5X1 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 RNU6-552P-201ENST00000362869 119 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 SNORA72.1-201ENST00000363485 129 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 CD24P4-201ENST00000382840 243 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 MIR514A1-201ENST00000385133 98 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 AL139281.1-201ENST00000422120 335 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 NDUFB4P6-201ENST00000436819 366 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 RPL37P4-201ENST00000448908 268 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 RPS29P26-201ENST00000477483 171 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 RN7SL633P-201ENST00000488974 297 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 RBBP4P6-201ENST00000508098 202 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 SCGB1D5P-201ENST00000515134 247 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 SNORD60.2-201ENST00000516883 86 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 AC011471.1-201ENST00000585766 187 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 AC090132.2-201ENST00000615881 347 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.16□□□□□ -1.9
SNX9Q9Y5X1 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms