Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AL138889.2-201ENST00000603883 242 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 Z84480.1-201ENST00000605131 311 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 MIR8057-201ENST00000620957 69 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC007318.2-201ENST00000620999 243 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC010338.1-201ENST00000621823 717 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AL359740.1-201ENST00000624340 592 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 MIR422A-201ENST00000362286 90 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 RNU6-1097P-201ENST00000363586 107 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 SNORA62.1-201ENST00000364287 154 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 SNORA71.1-201ENST00000364523 117 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 RNU6-108P-201ENST00000365558 107 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 RNU6-116P-201ENST00000384042 109 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 MIR578-201ENST00000384828 96 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AL138885.1-201ENST00000405921 675 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 U6atac.2-201ENST00000408644 118 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC097463.2-201ENST00000421074 142 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC104058.1-201ENST00000448028 297 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 NDUFB1P2-201ENST00000449477 176 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC009961.3-201ENST00000449832 765 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC080013.2-201ENST00000460866 323 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC112771.1-201ENST00000463581 102 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 MRPL42P6-201ENST00000486397 371 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 MTAPP1-201ENST00000489154 819 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC107016.2-201ENST00000547968 190 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC024153.1-201ENST00000603103 365 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC012119.1-201ENST00000603184 222 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 LRRC77P-213ENST00000637727 880 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.39□□□□□ -2.03
FOXA2Q9Y261 ELL2P3-201ENST00000457883 1602 ntBASIC2.39□□□□□ -2.03
FOXA2Q9Y261 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AC000403.1-201ENST00000613696 3585 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 RNU6-1287P-201ENST00000362914 107 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 SNORD14B-201ENST00000364533 90 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 SNORD115-7-201ENST00000365306 82 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 RNU6-456P-201ENST00000384493 107 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 RNU6-1060P-201ENST00000384664 107 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 CIR1P3-201ENST00000405137 479 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 SNORA11.1-201ENST00000408133 129 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 RPL21P90-201ENST00000415692 466 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 PIGFP2-201ENST00000421400 651 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AC133104.1-201ENST00000429100 218 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AC022018.1-201ENST00000430685 241 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 RPL7P12-201ENST00000446719 750 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 HMGB1P30-201ENST00000492455 606 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AC008885.1-201ENST00000514930 301 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 SMURF2P1-201ENST00000514992 481 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 RNU6-685P-201ENST00000517088 95 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AP004607.1-201ENST00000524456 203 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AP003072.2-201ENST00000527756 676 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AC009163.5-201ENST00000575421 637 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AC025811.1-201ENST00000604312 472 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AC006566.1-201ENST00000608943 513 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AL162274.2-201ENST00000614406 332 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 Z69908.1-201ENST00000622603 247 ntBASIC2.38□□□□□ -2.03
FOXA2Q9Y261 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
FOXA2Q9Y261 AL390237.1-201ENST00000404226 1415 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 MIR491-201ENST00000384877 84 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 MIR1-2-201ENST00000384961 85 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 SNORD88.1-201ENST00000408684 91 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 RNA5SP344-201ENST00000411081 104 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 EEF1A1P40-201ENST00000412883 573 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms