Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AL133445.2-201ENST00000611191 527 ntBASIC1.59□□□□□ -2.15
LMX1AQ8TE12 U4atac.1-201ENST00000618345 95 ntBASIC1.59□□□□□ -2.15
LMX1AQ8TE12 AP002791.1-201ENST00000623291 381 ntBASIC1.59□□□□□ -2.15
LMX1AQ8TE12 AP000676.3-201ENST00000623299 569 ntBASIC1.59□□□□□ -2.15
LMX1AQ8TE12 AC091932.3-201ENST00000624223 323 ntBASIC1.59□□□□□ -2.15
LMX1AQ8TE12 MTND5P30-201ENST00000452896 1731 ntBASIC1.59□□□□□ -2.16
LMX1AQ8TE12 AC099786.3-201ENST00000565735 1410 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 RNU1-42P-201ENST00000364033 160 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 SNORA16B-201ENST00000364674 135 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 Y_RNA.465-201ENST00000384293 102 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 RNU6-1176P-201ENST00000390955 107 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 CIR1P3-201ENST00000405137 479 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 U6atac.2-201ENST00000408644 118 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 MTATP6P19-201ENST00000413797 659 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 UBE2FP1-201ENST00000416536 447 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AL513185.2-201ENST00000425543 193 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.58□□□□□ -2.16
LMX1AQ8TE12 RPS25P9-201ENST00000435591 252 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC1.58□□□□□ -2.16
LMX1AQ8TE12 SNORA31.3-201ENST00000516029 96 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 SNORA31.6-201ENST00000516241 130 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 Y_RNA.673-201ENST00000516306 88 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 RNU6-703P-201ENST00000516946 107 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 SNORD19.2-201ENST00000516978 73 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC1.58□□□□□ -2.16
LMX1AQ8TE12 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC1.58□□□□□ -2.16
LMX1AQ8TE12 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.58□□□□□ -2.16
LMX1AQ8TE12 NACAP3-201ENST00000552100 481 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AL133241.1-201ENST00000556832 487 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AL133153.1-201ENST00000557756 303 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.58□□□□□ -2.16
LMX1AQ8TE12 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC1.58□□□□□ -2.16
LMX1AQ8TE12 BNIP3P8-201ENST00000597863 560 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AC004805.2-201ENST00000605382 482 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AC112220.3-201ENST00000605502 502 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AC012150.2-201ENST00000621300 544 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AC025048.6-202ENST00000627667 438 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC1.58□□□□□ -2.16
LMX1AQ8TE12 PCMTD1P7-201ENST00000634506 357 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AC099654.8-201ENST00000637757 681 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 AP000776.1-201ENST00000530032 1663 ntBASIC1.58□□□□□ -2.16
LMX1AQ8TE12 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 RNU4-92P-201ENST00000363783 136 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 RNU1-148P-201ENST00000384472 162 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 MIR19A-201ENST00000384878 82 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 RNU6-321P-201ENST00000410912 106 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AL030996.1-201ENST00000411430 235 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 MTCO1P17-201ENST00000411522 491 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 RPS3AP44-201ENST00000425466 790 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 ISCA1P1-201ENST00000426679 387 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AL445669.1-201ENST00000426743 755 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC244035.1-201ENST00000430042 390 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC010631.1-201ENST00000474150 156 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC108729.1-201ENST00000487812 947 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC034222.1-201ENST00000494052 532 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC093809.1-201ENST00000509155 340 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC108078.2-201ENST00000510750 236 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 RNA5SP216-201ENST00000516111 123 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 RN7SKP258-201ENST00000517151 304 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 SNORA31.25-201ENST00000517242 134 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 DNAJC19P9-201ENST00000555084 351 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 RPS3AP4-201ENST00000555161 764 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC023813.2-201ENST00000564321 469 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC136618.2-201ENST00000575091 400 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC060771.1-201ENST00000582031 164 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC103987.3-201ENST00000582071 292 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AF038458.1-201ENST00000588406 262 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC007229.1-201ENST00000590455 412 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC008749.1-201ENST00000597650 306 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AL645939.4-201ENST00000604495 135 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AL359821.1-201ENST00000605519 182 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC069294.1-201ENST00000608397 350 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 AC079416.3-201ENST00000624479 549 ntBASIC1.57□□□□□ -2.16
LMX1AQ8TE12 UGP2-231ENST00000627474 264 ntTSL 5 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.57□□□□□ -2.16
LMX1AQ8TE12 Y_RNA.226-201ENST00000364337 114 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 RNU6-60P-201ENST00000364792 103 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 RNA5SP125-201ENST00000364843 120 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 MIR122-201ENST00000385044 85 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms