Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SDAD1P3-201ENST00000427380 333 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 HMGN1P33-201ENST00000432945 451 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 RPS15AP5-201ENST00000436276 388 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 FABP5P14-201ENST00000437273 393 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 AC092393.1-201ENST00000439625 742 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 RNU1-98P-201ENST00000458992 160 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.17□□□□□ -2.22
USP54Q70EL1 AC048346.1-201ENST00000510247 144 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 AC103833.1-201ENST00000517442 172 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.17□□□□□ -2.22
USP54Q70EL1 IMMP1LP2-201ENST00000552954 492 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC1.17□□□□□ -2.22
USP54Q70EL1 AC105245.1-201ENST00000581934 244 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC1.17□□□□□ -2.22
USP54Q70EL1 MIR4275-201ENST00000636486 87 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.17□□□□□ -2.22
USP54Q70EL1 MTCO1P23-201ENST00000415223 1526 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.16□□□□□ -2.22
USP54Q70EL1 MIR218-1-201ENST00000384999 110 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 MIR514A1-201ENST00000385133 98 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 MIR561-201ENST00000385216 97 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AL121578.1-201ENST00000428051 892 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 RPL30P4-201ENST00000429309 333 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 NDUFA5P7-201ENST00000452914 242 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.16□□□□□ -2.22
USP54Q70EL1 AC021146.8-201ENST00000507455 733 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AC113420.1-201ENST00000507903 571 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AC105313.1-201ENST00000509121 353 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AC084033.1-201ENST00000550830 633 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC1.16□□□□□ -2.22
USP54Q70EL1 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC1.16□□□□□ -2.22
USP54Q70EL1 ABBA01006766.1-201ENST00000584728 294 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AC004067.1-201ENST00000608733 700 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AC003001.2-201ENST00000616294 831 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 MIR6130-201ENST00000619419 109 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AC080100.1-201ENST00000624239 5356 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 MTND1P37-201ENST00000636562 264 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.16□□□□□ -2.22
USP54Q70EL1 SGO1P1-201ENST00000603525 1447 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 U3.13-201ENST00000364804 214 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AL158823.1-201ENST00000418441 478 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AC093106.2-201ENST00000428212 385 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.16□□□□□ -2.22
USP54Q70EL1 Z82210.1-201ENST00000440037 231 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.16□□□□□ -2.22
USP54Q70EL1 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC1.16□□□□□ -2.22
USP54Q70EL1 AP005639.2-201ENST00000527592 928 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC1.16□□□□□ -2.22
USP54Q70EL1 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC1.16□□□□□ -2.22
USP54Q70EL1 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC1.16□□□□□ -2.22
USP54Q70EL1 MIR4299-201ENST00000577899 72 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 MIR4765-201ENST00000585007 77 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 UBE2Q2P6-201ENST00000612666 153 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC1.16□□□□□ -2.22
USP54Q70EL1 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC1.16□□□□□ -2.22
USP54Q70EL1 TRIM60P5Y-201ENST00000413946 574 ntBASIC1.15□□□□□ -2.23
USP54Q70EL1 OR6C66P-201ENST00000414917 930 ntBASIC1.15□□□□□ -2.23
USP54Q70EL1 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.15□□□□□ -2.23
USP54Q70EL1 CBX3P6-201ENST00000430257 527 ntBASIC1.15□□□□□ -2.23
USP54Q70EL1 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
USP54Q70EL1 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC1.15□□□□□ -2.23
USP54Q70EL1 SUMO2P2-201ENST00000456482 255 ntBASIC1.15□□□□□ -2.23
USP54Q70EL1 RPL26P9-201ENST00000457466 433 ntBASIC1.15□□□□□ -2.23
USP54Q70EL1 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC1.15□□□□□ -2.23
USP54Q70EL1 SNORD19.2-201ENST00000516978 73 ntBASIC1.15□□□□□ -2.23
USP54Q70EL1 RNA5SP291-201ENST00000517222 105 ntBASIC1.15□□□□□ -2.23
USP54Q70EL1 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC1.15□□□□□ -2.23
USP54Q70EL1 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.15□□□□□ -2.23
USP54Q70EL1 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.14□□□□□ -2.23
USP54Q70EL1 SNORD114-23-201ENST00000363536 72 ntBASIC1.14□□□□□ -2.23
USP54Q70EL1 RNU6-19P-201ENST00000384718 107 ntBASIC1.14□□□□□ -2.23
USP54Q70EL1 U8.14-201ENST00000390843 143 ntBASIC1.14□□□□□ -2.23
USP54Q70EL1 MIR934-201ENST00000401241 83 ntBASIC1.14□□□□□ -2.23
USP54Q70EL1 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC1.14□□□□□ -2.23
USP54Q70EL1 PNRC2P1-201ENST00000423940 420 ntBASIC1.14□□□□□ -2.23
USP54Q70EL1 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC1.14□□□□□ -2.23
USP54Q70EL1 AL929288.2-201ENST00000446368 407 ntBASIC1.14□□□□□ -2.23
USP54Q70EL1 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
USP54Q70EL1 RNU6-970P-201ENST00000516312 107 ntBASIC1.14□□□□□ -2.23
USP54Q70EL1 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC1.14□□□□□ -2.23
USP54Q70EL1 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC1.14□□□□□ -2.23
USP54Q70EL1 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.14□□□□□ -2.23
USP54Q70EL1 AC012435.1-202ENST00000568772 240 ntBASIC1.14□□□□□ -2.23
USP54Q70EL1 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.14□□□□□ -2.23
USP54Q70EL1 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.14□□□□□ -2.23
USP54Q70EL1 AC008163.1-202ENST00000636004 2889 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 RNA5SP457-201ENST00000363657 124 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 RNU6-884P-201ENST00000363889 107 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 AL356421.1-201ENST00000403255 413 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.13□□□□□ -2.23
USP54Q70EL1 AL592310.1-201ENST00000414330 671 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 BTF3P8-201ENST00000414577 526 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 ZNF863P-201ENST00000426746 417 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 RPL7P34-201ENST00000433316 712 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 AC087884.1-201ENST00000469738 328 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC1.13□□□□□ -2.23
USP54Q70EL1 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.13□□□□□ -2.23
USP54Q70EL1 AC090502.2-201ENST00000549267 280 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.13□□□□□ -2.23
USP54Q70EL1 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms