Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC004975.1-201ENST00000428733 208 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AC005019.1-201ENST00000436455 431 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXA1P49639 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXA1P49639 GSTA11P-201ENST00000452866 669 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 FABP5P15-201ENST00000453566 214 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.81□□□□□ -1.96
HOXA1P49639 RNA5SP310-201ENST00000459084 116 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AC117503.1-201ENST00000472241 394 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXA1P49639 AC103851.1-201ENST00000506833 274 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 HMGN1P11-201ENST00000508668 303 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.81□□□□□ -1.96
HOXA1P49639 RNA5SP76-201ENST00000516277 87 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 RNU6-928P-201ENST00000516876 104 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 RNA5SP165-201ENST00000517142 115 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXA1P49639 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXA1P49639 HMGB1P14-201ENST00000557424 591 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXA1P49639 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXA1P49639 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXA1P49639 AC136601.2-201ENST00000604356 474 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AC004805.2-201ENST00000605382 482 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AC002044.1-201ENST00000606707 158 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXA1P49639 RNA5SP196-201ENST00000625967 102 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
HOXA1P49639 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.81□□□□□ -1.96
HOXA1P49639 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXA1P49639 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXA1P49639 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXA1P49639 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXA1P49639 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXA1P49639 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXA1P49639 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXA1P49639 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXA1P49639 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXA1P49639 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXA1P49639 FRG1CP-201ENST00000358464 769 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 Y_RNA.142-201ENST00000363491 102 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 Y_RNA.529-201ENST00000384586 119 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 RNU6-1179P-201ENST00000384667 107 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 RNU6-1025P-201ENST00000410629 104 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXA1P49639 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXA1P49639 AL158156.1-201ENST00000422509 473 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 RPL7P2-201ENST00000427639 268 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXA1P49639 IFNA20P-201ENST00000436840 528 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 Z82210.1-201ENST00000440037 231 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXA1P49639 RPL7P43-201ENST00000478876 753 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 RPS15AP34-201ENST00000487776 387 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 AC091885.1-201ENST00000506658 268 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 RNU1-86P-201ENST00000516108 154 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 RNU6-189P-201ENST00000516120 101 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 RNU1-107P-201ENST00000516617 154 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 RNU6-143P-201ENST00000516942 93 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 RNU6-711P-201ENST00000517255 106 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 AC009902.1-201ENST00000519351 183 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 AP003122.3-201ENST00000526316 255 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 AC084851.1-201ENST00000529105 249 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXA1P49639 AC090115.3-201ENST00000553218 849 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 AL157871.3-201ENST00000557231 293 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXA1P49639 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.8□□□□□ -1.96
HOXA1P49639 MIR548AC-201ENST00000585049 88 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXA1P49639 U2.17-201ENST00000611454 95 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 AL359314.1-201ENST00000616913 261 ntBASIC2.8□□□□□ -1.96
HOXA1P49639 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXA1P49639 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXA1P49639 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.79□□□□□ -1.96
HOXA1P49639 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXA1P49639 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXA1P49639 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
HOXA1P49639 FTLP6-201ENST00000355274 422 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXA1P49639 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
HOXA1P49639 SNORA57.1-201ENST00000391227 145 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 AL591034.1-201ENST00000407447 340 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXA1P49639 AL590383.1-201ENST00000428602 75 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXA1P49639 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXA1P49639 MTND3P23-201ENST00000431980 347 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 AL591704.1-201ENST00000432574 275 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXA1P49639 AC091390.1-201ENST00000433904 331 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC2.79□□□□□ -1.96
HOXA1P49639 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXA1P49639 NOTCH2P1-201ENST00000443481 624 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 PPP1R2P5-201ENST00000457256 603 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 RNU6-329P-201ENST00000459618 107 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 MTND4P17-201ENST00000470444 350 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 TRBV1-201ENST00000476502 284 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 AP002812.1-201ENST00000495378 474 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 180 ms