Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RNA5SP217-201ENST00000515959 91 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 RN7SKP272-201ENST00000516988 232 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 AL133241.1-201ENST00000556832 487 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.82□□□□□ -1.8
HMGB1P09429 AC073539.2-201ENST00000597113 165 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 AC008739.3-201ENST00000603262 127 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 AL138963.2-201ENST00000605137 226 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 AC021646.1-201ENST00000605469 484 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 AC008536.2-201ENST00000607284 349 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 AL591516.1-201ENST00000611326 274 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 AC099842.1-201ENST00000619919 596 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 AC091903.1-201ENST00000624322 454 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 U6.105-201ENST00000637379 88 ntBASIC3.82□□□□□ -1.8
HMGB1P09429 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.82□□□□□ -1.8
HMGB1P09429 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HMGB1P09429 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
HMGB1P09429 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.82□□□□□ -1.8
HMGB1P09429 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
HMGB1P09429 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.81□□□□□ -1.8
HMGB1P09429 OR4G2P-201ENST00000328113 903 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 RNU6-45P-201ENST00000384471 107 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 RNU2-63P-201ENST00000410792 194 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.81□□□□□ -1.8
HMGB1P09429 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC3.81□□□□□ -1.8
HMGB1P09429 RPL32P35-201ENST00000415214 394 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.81□□□□□ -1.8
HMGB1P09429 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.81□□□□□ -1.8
HMGB1P09429 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.81□□□□□ -1.8
HMGB1P09429 AL139281.1-201ENST00000422120 335 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HMGB1P09429 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.81□□□□□ -1.8
HMGB1P09429 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
HMGB1P09429 MTND1P18-201ENST00000448191 573 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.81□□□□□ -1.8
HMGB1P09429 AC006026.2-201ENST00000457376 180 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 AC010424.1-201ENST00000506336 297 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 RNU1-143P-201ENST00000516296 146 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 AP005902.1-201ENST00000521358 186 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.81□□□□□ -1.8
HMGB1P09429 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.81□□□□□ -1.8
HMGB1P09429 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.81□□□□□ -1.8
HMGB1P09429 AC110760.3-201ENST00000598794 467 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 AC008945.2-201ENST00000606056 604 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 U1.23-201ENST00000610293 146 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 RNU1-68P-201ENST00000615382 146 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.81□□□□□ -1.8
HMGB1P09429 MIR5739-201ENST00000619803 80 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 U1.39-201ENST00000621562 146 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.81□□□□□ -1.8
HMGB1P09429 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.81□□□□□ -1.8
HMGB1P09429 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
HMGB1P09429 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.81□□□□□ -1.8
HMGB1P09429 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HMGB1P09429 AC006020.1-201ENST00000420179 1854 ntBASIC3.81□□□□□ -1.8
HMGB1P09429 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HMGB1P09429 MTCO1P12-201ENST00000414273 1543 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HMGB1P09429 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HMGB1P09429 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HMGB1P09429 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.8□□□□□ -1.8
HMGB1P09429 Y_RNA.553-201ENST00000384670 102 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 HMGN2P35-201ENST00000412164 270 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 MTCO2P34-201ENST00000421994 607 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 AC003685.2-201ENST00000422795 395 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 AL596276.1-201ENST00000434465 418 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 MTCO2P16-201ENST00000436962 677 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 MTCO1P19-201ENST00000443487 500 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 RN7SL283P-201ENST00000489055 303 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.8□□□□□ -1.8
HMGB1P09429 AC108043.1-201ENST00000512696 574 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 RPL7P20-201ENST00000520308 745 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.8□□□□□ -1.8
HMGB1P09429 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.8□□□□□ -1.8
HMGB1P09429 AC006362.1-201ENST00000567392 174 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 MIR2682-201ENST00000580305 110 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 AC010620.1-201ENST00000601088 1102 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 AL161756.2-201ENST00000604597 246 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HMGB1P09429 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HMGB1P09429 AC000403.1-201ENST00000613696 3585 ntBASIC3.8□□□□□ -1.8
HMGB1P09429 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
HMGB1P09429 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
HMGB1P09429 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HMGB1P09429 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HMGB1P09429 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HMGB1P09429 Y_RNA.77-201ENST00000362962 107 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 RNU6-843P-201ENST00000384454 104 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HMGB1P09429 RAP1BP3-201ENST00000407180 549 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 RNA5SP293-201ENST00000410527 113 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 AC007064.1-201ENST00000412238 351 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 EIF4EP4-201ENST00000424916 578 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.79□□□□□ -1.8
HMGB1P09429 AL139109.1-201ENST00000455491 297 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 RPL31P3-201ENST00000458430 332 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 RPL7P43-201ENST00000478876 753 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HMGB1P09429 AF213884.2-201ENST00000510417 903 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms