Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
HOXD4P09016 Y_RNA.9-201ENST00000362354 101 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 RNU5A-1-201ENST00000362698 116 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 Y_RNA.248-201ENST00000364501 109 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 RNU6-641P-201ENST00000384006 107 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AL096701.2-201ENST00000416920 238 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 ATG3P1-201ENST00000419507 911 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AC063976.3-201ENST00000426849 329 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AC008850.1-201ENST00000427546 362 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 ELOCP14-201ENST00000428070 331 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXD4P09016 AL590383.1-201ENST00000428602 75 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AL139415.2-201ENST00000431968 163 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 USP12PX-201ENST00000432383 1057 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXD4P09016 AC087499.2-201ENST00000432861 149 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 MTATP6P16-201ENST00000434543 526 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 ELOCP7-201ENST00000439968 331 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXD4P09016 FDX1P2-201ENST00000450769 375 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 FGF7P6-202ENST00000451282 293 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AC104472.2-201ENST00000469035 601 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.6□□□□□ -1.99
HOXD4P09016 RPL31P60-201ENST00000478450 367 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXD4P09016 OR5AQ1P-201ENST00000527596 927 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AP001646.1-201ENST00000527936 915 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
HOXD4P09016 OR4R1P-201ENST00000529879 463 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AC093012.1-202ENST00000549403 582 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 DNAJC8P1-201ENST00000554535 372 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AL512360.1-201ENST00000555346 234 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXD4P09016 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXD4P09016 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXD4P09016 AC092325.1-201ENST00000566449 554 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXD4P09016 MIR3609-201ENST00000582661 80 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 MIR4801-201ENST00000582704 82 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXD4P09016 AC104984.5-201ENST00000586878 94 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AC007363.1-201ENST00000604736 620 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 RBM11P1-201ENST00000604951 799 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXD4P09016 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXD4P09016 SDR42E1P2-201ENST00000614861 481 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AC007014.2-201ENST00000615581 479 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AC010133.1-201ENST00000615809 842 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXD4P09016 MIR3688-2-201ENST00000636963 87 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXD4P09016 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
HOXD4P09016 AL359693.1-201ENST00000614959 2407 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXD4P09016 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXD4P09016 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.59□□□□□ -1.99
HOXD4P09016 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.59□□□□□ -1.99
HOXD4P09016 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HOXD4P09016 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
HOXD4P09016 RNU4-82P-201ENST00000362443 140 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 RNU6-1120P-201ENST00000362988 108 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 RNU6-799P-201ENST00000363567 107 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 SMIM11P1-201ENST00000369586 178 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 RNU6-701P-201ENST00000384059 107 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 NDUFS5P1-201ENST00000405668 289 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 RNU2-39P-201ENST00000410604 198 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 MTND1P23-201ENST00000416931 372 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 NDUFB4P7-201ENST00000423198 363 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXD4P09016 MRPS10P2-201ENST00000431226 381 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 AL596276.1-201ENST00000434465 418 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.59□□□□□ -1.99
HOXD4P09016 RPL7P54-201ENST00000438336 674 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXD4P09016 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.59□□□□□ -1.99
HOXD4P09016 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXD4P09016 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXD4P09016 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.59□□□□□ -1.99
HOXD4P09016 AC027673.1-201ENST00000456245 405 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 AC022364.2-201ENST00000457963 554 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 RNU6-420P-201ENST00000458780 107 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 RPL21P41-201ENST00000459863 264 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 AC092989.1-201ENST00000481235 277 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 RN7SL297P-201ENST00000483161 293 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 RN7SL633P-201ENST00000488974 297 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 AL049874.1-201ENST00000489560 388 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 AIG1P1-201ENST00000503376 148 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 AC109927.2-201ENST00000506416 303 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 AC006445.2-201ENST00000510061 472 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 SNORD27.1-201ENST00000516319 72 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
HOXD4P09016 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXD4P09016 AC104383.1-201ENST00000530297 370 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.59□□□□□ -1.99
HOXD4P09016 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HOXD4P09016 HMGB1P6-201ENST00000569046 646 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 MIR4435-1-201ENST00000582552 80 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 DPPA3P3-201ENST00000603842 430 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 AC007621.1-201ENST00000604544 437 ntBASIC2.59□□□□□ -1.99
HOXD4P09016 AC008536.2-201ENST00000607284 349 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms