Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-336P-201ENST00000364891 107 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-1130P-201ENST00000365434 107 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-741P-201ENST00000383889 107 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-318P-201ENST00000384283 103 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 RNU1-106P-201ENST00000384382 164 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 SNORA70-201ENST00000384436 135 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 UBA52P6-201ENST00000399822 382 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 AL592291.1-201ENST00000403830 352 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 RPL23AP36-201ENST00000413895 458 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 RPL27AP8-201ENST00000424277 446 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 MTCO1P5-201ENST00000433573 344 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 AC092798.1-201ENST00000458542 409 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 snoU13.24-201ENST00000458998 104 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 AC139453.3-201ENST00000493276 369 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-62P-201ENST00000516526 102 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-572P-201ENST00000516724 80 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 RNA5SP34-201ENST00000516887 130 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 AC090132.2-201ENST00000615881 347 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 AL022401.1-201ENST00000619498 108 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 AC099506.2-201ENST00000623074 221 ntBASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HIF3AQ9Y2N7 AC233981.2-201ENST00000611524 1614 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 RNA5SP361-201ENST00000362686 118 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 U8.4-201ENST00000363626 134 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 RNU5E-7P-201ENST00000365290 117 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-1289P-201ENST00000384431 106 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 RN7SKP125-201ENST00000410481 302 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 BMS1P22-201ENST00000414726 313 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 RPS15AP7-201ENST00000439294 405 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AC009296.1-201ENST00000443146 155 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AL078601.1-201ENST00000444542 271 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 ANP32BP2-201ENST00000454525 545 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 snoU109.2-201ENST00000459316 135 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AC005532.2-201ENST00000467154 373 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AC091959.1-201ENST00000495857 238 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-479P-201ENST00000516348 105 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 RPL21P9-201ENST00000556149 474 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 MIR4308-201ENST00000580634 81 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 MIR4282-201ENST00000583613 67 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AL121932.1-201ENST00000605542 214 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AC084757.4-201ENST00000616350 526 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 MIR6719-201ENST00000622428 87 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 AC091895.1-201ENST00000624494 256 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 IGHVIII-44-202ENST00000636235 289 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 U4.7-201ENST00000638126 106 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 SALL4P2-201ENST00000423288 2910 ntBASIC4.35□□□□□ -1.71
HIF3AQ9Y2N7 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 RNU4-9P-201ENST00000364951 139 ntBASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 SNORA22C-201ENST00000384614 134 ntBASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 RNU6-959P-201ENST00000384671 107 ntBASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 SNORD12B-201ENST00000410433 91 ntBASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 AC016700.2-201ENST00000446011 156 ntBASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 AL031659.1-201ENST00000447075 539 ntBASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 MRPS10P1-201ENST00000448483 130 ntBASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 RPL23AP56-201ENST00000460778 453 ntBASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 AC140172.1-201ENST00000502928 141 ntBASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 RNA5SP165-201ENST00000517142 115 ntBASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 AC044860.2-201ENST00000561005 179 ntBASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 164.9 ms