Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS4AQ9UN37 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS4AQ9UN37 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.44□□□□□ -1.86
VPS4AQ9UN37 RNU6-1038P-201ENST00000516516 104 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 RN7SKP256-201ENST00000517201 314 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 AC243972.3-201ENST00000539655 198 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.44□□□□□ -1.86
VPS4AQ9UN37 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS4AQ9UN37 AC002545.1-201ENST00000592511 181 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 AC106900.2-201ENST00000604994 317 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
VPS4AQ9UN37 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS4AQ9UN37 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS4AQ9UN37 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS4AQ9UN37 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 RNA5SP51-201ENST00000364750 119 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 RNU6-434P-201ENST00000384376 107 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 RNU6-393P-201ENST00000384475 107 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 MIR128-1-201ENST00000384921 82 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 U3.19-201ENST00000390893 196 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 U3.26-201ENST00000391236 204 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 ATP5A1P2-201ENST00000412323 255 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 RPL7P10-201ENST00000417407 739 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AC092047.1-201ENST00000424997 240 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AL158071.1-201ENST00000430315 461 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AC092001.1-201ENST00000453012 261 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AC006539.3-201ENST00000454258 129 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 RNU7-167P-201ENST00000459160 62 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 RPL21P41-201ENST00000459863 264 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AL160314.1-201ENST00000490836 438 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 BTF3P12-201ENST00000519620 469 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 RANP9-201ENST00000519957 271 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 NDUFB9P3-201ENST00000521269 501 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AP001804.3-201ENST00000525146 880 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 MIR4742-201ENST00000581069 85 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AC006077.1-201ENST00000604746 343 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 CTHRC1P1-201ENST00000605383 469 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 Z82243.1-201ENST00000609432 473 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AC069234.5-201ENST00000611056 416 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AL110115.1-201ENST00000614396 364 ntBASIC3.43□□□□□ -1.86
VPS4AQ9UN37 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS4AQ9UN37 AC007496.3-201ENST00000624987 3443 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS4AQ9UN37 SRP72P2-201ENST00000344851 1979 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS4AQ9UN37 RNU6-50P-201ENST00000362356 103 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 Y_RNA.301-201ENST00000364990 103 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 Y_RNA.373-201ENST00000365600 103 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VPS4AQ9UN37 DEFB109C-201ENST00000382575 264 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 DEFB109B-201ENST00000382656 264 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 RNU6-741P-201ENST00000383889 107 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 Y_RNA.414-201ENST00000384011 101 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 Y_RNA.509-201ENST00000384506 99 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 RNA5SP129-201ENST00000410276 118 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 RNA5SP111-201ENST00000411386 101 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 HSPE1P1-201ENST00000421494 318 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AL353678.1-201ENST00000422735 741 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AC009237.8-201ENST00000445492 379 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AL360271.2-201ENST00000447710 161 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 MRPS31P2-201ENST00000451581 518 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS4AQ9UN37 RPL37P6-201ENST00000460682 294 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 DYNLL1P5-201ENST00000467158 270 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AL049873.1-201ENST00000480540 376 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AC083904.1-201ENST00000487828 231 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AC010265.1-201ENST00000513509 211 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 RNU4-49P-201ENST00000516080 140 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 RNU6-189P-201ENST00000516120 101 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 RNU2-27P-201ENST00000516185 142 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 Y_RNA.691-201ENST00000516611 103 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 RNU7-30P-201ENST00000516835 62 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 RNU6-579P-201ENST00000516879 102 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AC007991.1-201ENST00000522680 631 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AP003122.3-201ENST00000526316 255 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AC084851.1-201ENST00000529105 249 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS4AQ9UN37 SCOCP1-201ENST00000554676 349 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 TRAV28-201ENST00000557548 323 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VPS4AQ9UN37 RPS3AP23-202ENST00000574601 686 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 MIR1273C-201ENST00000578669 77 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms