Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 RNU6-961P-201ENST00000363893 105 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 Y_RNA.262-201ENST00000364641 102 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 RNU1-100P-201ENST00000365255 165 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 MIR888-201ENST00000401186 77 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 RN7SKP51-201ENST00000410781 304 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 AL356535.1-201ENST00000440335 398 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 HMGB3P8-201ENST00000449709 577 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 AC005042.3-201ENST00000453230 174 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 RNA5SP230-201ENST00000517039 122 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 MIR4277-201ENST00000578298 84 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 BX322639.1-202ENST00000423987 2213 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 FAM35BP-202ENST00000497389 3337 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 RNA5SP479-201ENST00000364858 117 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 RNU6-804P-201ENST00000384286 107 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 U3.19-201ENST00000390893 196 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 RNA5SP241-201ENST00000391326 114 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 RN7SKP27-201ENST00000410684 333 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 RN7SKP100-201ENST00000411258 284 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 NDUFS5P4-201ENST00000412983 318 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 NDUFB4P6-201ENST00000436819 366 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 RPL7AP61-201ENST00000443410 636 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 UQCRBP2-201ENST00000447827 297 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 RN7SL443P-201ENST00000464331 290 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 AC020890.1-201ENST00000491837 504 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 RNU6-346P-201ENST00000516288 111 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 AP001880.2-201ENST00000538233 448 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 RN7SL290P-201ENST00000578661 300 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 MIR4660-201ENST00000583549 74 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 BPIFA4P-203ENST00000603168 689 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 AC012468.1-201ENST00000604888 430 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIMD1Q9UGP4 MUC2-202ENST00000613187 4845 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 Y_RNA.8-201ENST00000362353 102 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 RNA5SP515-201ENST00000364570 118 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 RNU6-923P-201ENST00000364753 107 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 RNU6-213P-201ENST00000384051 104 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 U3.22-201ENST00000391120 215 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 Y_RNA.597-201ENST00000410463 100 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 RPL23AP26-201ENST00000412728 464 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 MRPS10P1-201ENST00000448483 130 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 RPS4XP22-201ENST00000480755 780 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 RN7SKP122-201ENST00000515923 296 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 RPL21P9-201ENST00000556149 474 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 AC022441.3-201ENST00000605737 136 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 AC010999.1-201ENST00000611856 324 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 AC068831.7-201ENST00000616954 363 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 MTND1P7-201ENST00000632801 297 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 MIR6830-201ENST00000636015 70 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 AC092376.2-201ENST00000622621 4116 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 AP001273.1-201ENST00000624493 3152 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 AC126323.6-202ENST00000568092 3511 ntBASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.23□□□□□ -1.57
LIMD1Q9UGP4 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 AC073073.2-201ENST00000609827 2578 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 SNORD50B-201ENST00000364995 70 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms