Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
NKX3-1Q99801 RN7SKP58-201ENST00000411010 305 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 OR6C66P-201ENST00000414917 930 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 MTCYBP5-201ENST00000423752 1135 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 SKA2P1-201ENST00000425592 390 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 AL596276.1-201ENST00000434465 418 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 Z75741.1-201ENST00000446793 314 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AL031183.1-201ENST00000457667 207 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 GMFBP1-201ENST00000467831 427 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC083798.1-201ENST00000472671 131 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AP004217.1-201ENST00000480579 346 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AL163973.1-201ENST00000484753 577 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC105417.1-201ENST00000514691 285 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 RNA5SP401-201ENST00000515920 127 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 MTND4LP26-201ENST00000518144 282 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC009902.1-201ENST00000519351 183 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 RANP3-201ENST00000530970 276 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC027807.1-201ENST00000559921 996 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 MIR5583-1-201ENST00000580941 59 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 UBL5P2-201ENST00000583788 219 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 MTND4LP5-201ENST00000605152 292 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC073657.2-201ENST00000605661 303 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
NKX3-1Q99801 AL627309.6-201ENST00000606857 840 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC004832.5-201ENST00000608677 401 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 MIR7112-201ENST00000616126 65 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC007318.2-201ENST00000620999 243 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 AC091564.4-201ENST00000533934 2194 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 AL354685.2-201ENST00000448218 1447 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
NKX3-1Q99801 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
NKX3-1Q99801 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 RNU6-1322P-201ENST00000364309 107 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 Y_RNA.255-201ENST00000364581 97 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 Y_RNA.450-201ENST00000384198 113 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 SNORA9-201ENST00000384215 133 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 RNU2-68P-201ENST00000410878 191 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 EEF1A1P40-201ENST00000412883 573 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 TIMM9P3-201ENST00000428659 274 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 AL591704.1-201ENST00000432574 275 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 UBE2V1P8-201ENST00000437166 265 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 CYCSP32-201ENST00000440548 321 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 RPL37P4-201ENST00000448908 268 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC003071.1-201ENST00000451219 789 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 RPL37P6-201ENST00000460682 294 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC126182.1-201ENST00000478134 357 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC092989.1-201ENST00000481235 277 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 RPL36AP51-201ENST00000487216 318 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC022493.1-201ENST00000492984 337 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 RNU6-143P-201ENST00000516942 93 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 AP003122.3-201ENST00000526316 255 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC084851.1-201ENST00000529105 249 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 HMGB1P14-201ENST00000557424 591 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC078899.3-201ENST00000599065 212 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC092794.1-201ENST00000612734 582 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 AC024940.5-201ENST00000622889 474 ntBASIC2.64□□□□□ -1.99
NKX3-1Q99801 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.64□□□□□ -1.99
NKX3-1Q99801 ELF2P3-201ENST00000445099 1506 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC108206.1-201ENST00000570186 4159 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 AL139276.1-201ENST00000311910 1001 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC073325.2-201ENST00000339545 159 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 RNU6-552P-201ENST00000362869 119 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 RNU6-371P-201ENST00000364283 108 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 MIR578-201ENST00000384828 96 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 145.4 ms