| ATXN2 | Q99700 | PLCZ1-209 | ENST00000539875 | 1398 nt | TSL 1 (best) BASIC | 3.2 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | IL23R-205 | ENST00000637002 | 2208 nt | TSL 1 (best) BASIC | 3.2 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RNU6-179P-201 | ENST00000363350 | 107 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RNU6-996P-201 | ENST00000365438 | 107 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RNU6-1029P-201 | ENST00000384109 | 107 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RNY3P14-201 | ENST00000384309 | 102 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | Y_RNA.576-201 | ENST00000384781 | 102 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC092809.3-201 | ENST00000415453 | 231 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL356134.1-201 | ENST00000419815 | 373 nt | TSL 3 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL138900.2-201 | ENST00000434098 | 156 nt | TSL 3 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | HMGB1P31-201 | ENST00000437242 | 427 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | MTATP6P23-201 | ENST00000440153 | 476 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL353572.1-201 | ENST00000442490 | 417 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | MTCO2P3-201 | ENST00000442543 | 421 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL157882.1-201 | ENST00000447148 | 429 nt | TSL 3 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | DPPA3P1-201 | ENST00000448050 | 469 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | FABP5P13-201 | ENST00000452144 | 328 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | MTUS2-AS2-203 | ENST00000452602 | 651 nt | TSL 3 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL356010.1-201 | ENST00000456364 | 102 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | KC877373.1-201 | ENST00000479066 | 408 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL163973.1-201 | ENST00000484753 | 577 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC093534.2-201 | ENST00000511418 | 420 nt | TSL 3 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | Y_RNA.689-201 | ENST00000516589 | 107 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC026470.3-201 | ENST00000563994 | 438 nt | TSL 3 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC118755.2-201 | ENST00000584676 | 212 nt | TSL 3 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC008945.2-201 | ENST00000606056 | 604 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | NPPA-AS1_3.1-201 | ENST00000617059 | 108 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | MUCL1-205 | ENST00000619042 | 243 nt | APPRIS ALT2 TSL 5 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC010338.1-201 | ENST00000621823 | 717 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | FER-210 | ENST00000628534 | 558 nt | TSL 5 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AP003481.1-201 | ENST00000637808 | 351 nt | TSL 5 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | ZFYVE16-202 | ENST00000505560 | 6599 nt | APPRIS P1 TSL 1 (best) BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | SCOC-203 | ENST00000394203 | 1999 nt | TSL 2 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | FIGNL1-202 | ENST00000395556 | 3485 nt | APPRIS P1 TSL 2 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | SERPINA7-201 | ENST00000327674 | 2642 nt | APPRIS P1 TSL 1 (best) BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | CKAP2P1-201 | ENST00000555477 | 2049 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | PIK3CA-201 | ENST00000263967 | 9093 nt | APPRIS P1 TSL 2 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | LRRC6-212 | ENST00000618342 | 1754 nt | APPRIS ALT1 TSL 5 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RICTOR-201 | ENST00000296782 | 7505 nt | TSL 1 (best) BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | ABCG2-204 | ENST00000515655 | 4276 nt | TSL 1 (best) BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | Y_RNA.255-201 | ENST00000364581 | 97 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | SNORD115-7-201 | ENST00000365306 | 82 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RNU6-877P-201 | ENST00000383868 | 107 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | TRAV26-1-201 | ENST00000390455 | 537 nt | APPRIS P1 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL451054.2-201 | ENST00000420896 | 202 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL078601.2-201 | ENST00000429444 | 474 nt | TSL 2 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | DDX3P2-201 | ENST00000446138 | 111 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC073415.1-201 | ENST00000449240 | 153 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | ZEB1-AS1-204 | ENST00000450834 | 576 nt | TSL 3 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | ITCH-AS1-201 | ENST00000454205 | 299 nt | TSL 5 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RNU7-182P-201 | ENST00000459009 | 62 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RPS29P25-201 | ENST00000481709 | 171 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RN7SKP219-201 | ENST00000516825 | 296 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RN7SKP258-201 | ENST00000517151 | 304 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | CLEC2D-214 | ENST00000543300 | 399 nt | TSL 1 (best) BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | CLEC2D-216 | ENST00000545918 | 288 nt | TSL 1 (best) BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AP005205.1-201 | ENST00000563503 | 508 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RPL23AP84-201 | ENST00000571193 | 464 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC087749.2-201 | ENST00000583910 | 352 nt | TSL 5 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | BNIP3P30-201 | ENST00000601184 | 574 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RPL12P50-201 | ENST00000603116 | 116 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL158032.1-201 | ENST00000605401 | 106 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC116312.1-201 | ENST00000606841 | 314 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL359198.2-201 | ENST00000611836 | 194 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC130324.3-201 | ENST00000614165 | 542 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | HOTAIRM1_2.1-201 | ENST00000616712 | 215 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC024940.5-201 | ENST00000622889 | 474 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC068631.1-219 | ENST00000625826 | 668 nt | TSL 5 BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | MIR4275-201 | ENST00000636486 | 87 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | MIR3662-201 | ENST00000637030 | 95 nt | BASIC | 3.19 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | GABRG2-229 | ENST00000641017 | 3628 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | MTND5P17-201 | ENST00000418405 | 1603 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | SENP7-204 | ENST00000394085 | 1483 nt | TSL 1 (best) BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | Y_RNA.303-201 | ENST00000364998 | 94 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | Y_RNA.573-201 | ENST00000384763 | 105 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | TRAV7-201 | ENST00000390429 | 337 nt | APPRIS P1 BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC079150.1-201 | ENST00000413043 | 383 nt | TSL 3 BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL451074.5-201 | ENST00000415894 | 435 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AF241725.1-201 | ENST00000416182 | 480 nt | TSL 3 BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RPL30P16-201 | ENST00000419341 | 429 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | TRAPPC2P4-201 | ENST00000421750 | 331 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RPL7L1P10-201 | ENST00000427790 | 463 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AF124730.1-201 | ENST00000430001 | 327 nt | TSL 2 BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | LINC00844-201 | ENST00000432535 | 477 nt | TSL 2 BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL080284.1-201 | ENST00000434493 | 442 nt | TSL 2 BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AL136234.1-201 | ENST00000437080 | 349 nt | TSL 2 BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC020743.3-201 | ENST00000440351 | 360 nt | TSL 3 BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | WASF1P1-201 | ENST00000447560 | 1131 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | GMFBP1-201 | ENST00000467831 | 427 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RN7SL429P-201 | ENST00000479090 | 223 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RN7SL489P-201 | ENST00000486185 | 223 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RN7SL327P-201 | ENST00000488659 | 223 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC104806.1-201 | ENST00000508720 | 308 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC105417.1-201 | ENST00000514691 | 285 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RNU6-1178P-201 | ENST00000516674 | 107 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | RNU6-826P-201 | ENST00000516827 | 104 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC090138.1-201 | ENST00000524493 | 578 nt | TSL 4 BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AP005435.4-201 | ENST00000529514 | 284 nt | BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | AC078778.1-201 | ENST00000547177 | 735 nt | TSL 3 BASIC | 3.18 | □□□□□ -1.9 | | |
| ATXN2 | Q99700 | G2E3-AS1-202 | ENST00000550118 | 609 nt | TSL 5 BASIC | 3.18 | □□□□□ -1.9 | | |