Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
NUP88Q99567 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
NUP88Q99567 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.87□□□□□ -1.79
NUP88Q99567 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
NUP88Q99567 AL353746.1-201ENST00000566293 6881 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 SNORD6-201ENST00000365444 73 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 Y_RNA.378-201ENST00000365652 113 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 RNU6-45P-201ENST00000384471 107 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 MIR514A2-201ENST00000385131 88 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 MIR514A3-201ENST00000385132 88 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
NUP88Q99567 U3.19-201ENST00000390893 196 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 RNA5SP219-201ENST00000390940 113 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 AL162578.1-201ENST00000406202 378 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.87□□□□□ -1.79
NUP88Q99567 AL513185.2-201ENST00000425543 193 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.87□□□□□ -1.79
NUP88Q99567 PRPS1P1-201ENST00000445305 876 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.87□□□□□ -1.79
NUP88Q99567 AL590639.1-201ENST00000456484 337 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.87□□□□□ -1.79
NUP88Q99567 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
NUP88Q99567 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.87□□□□□ -1.79
NUP88Q99567 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.87□□□□□ -1.79
NUP88Q99567 AP000763.2-201ENST00000540641 163 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 AL121579.1-201ENST00000555129 305 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 AC012119.1-201ENST00000603184 222 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
NUP88Q99567 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.87□□□□□ -1.79
NUP88Q99567 AC092807.2-201ENST00000609367 243 ntBASIC3.87□□□□□ -1.79
NUP88Q99567 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.79
NUP88Q99567 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
NUP88Q99567 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.87□□□□□ -1.79
NUP88Q99567 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
NUP88Q99567 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.86□□□□□ -1.79
NUP88Q99567 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
NUP88Q99567 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.86□□□□□ -1.79
NUP88Q99567 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.86□□□□□ -1.79
NUP88Q99567 RNU1-70P-201ENST00000362618 164 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 AP002088.1-201ENST00000382740 395 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 RNU6-217P-201ENST00000384164 104 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 RNU6-1035P-201ENST00000384477 107 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 MIR578-201ENST00000384828 96 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 HMGN2P30-201ENST00000423237 256 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC3.86□□□□□ -1.79
NUP88Q99567 RPS29P2-201ENST00000479278 136 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.86□□□□□ -1.79
NUP88Q99567 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.86□□□□□ -1.79
NUP88Q99567 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.86□□□□□ -1.79
NUP88Q99567 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.86□□□□□ -1.79
NUP88Q99567 TBCAP3-201ENST00000512475 312 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 AC112206.3-201ENST00000514578 389 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.86□□□□□ -1.79
NUP88Q99567 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
NUP88Q99567 AC005730.3-201ENST00000583067 366 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 AC011712.1-201ENST00000588959 234 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 ATP1B3P1-201ENST00000605365 821 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 FTX_3.1-201ENST00000610451 147 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 DUSP12P1-201ENST00000612874 516 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 AC090617.10-201ENST00000624308 134 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 U6.99-201ENST00000637524 83 ntBASIC3.86□□□□□ -1.79
NUP88Q99567 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
NUP88Q99567 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
NUP88Q99567 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
NUP88Q99567 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
NUP88Q99567 AL021368.2-201ENST00000606125 5352 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.85□□□□□ -1.79
NUP88Q99567 Y_RNA.88-201ENST00000363029 99 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
NUP88Q99567 SNORA16.2-201ENST00000390991 127 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 BX682237.1-201ENST00000415016 335 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.85□□□□□ -1.79
NUP88Q99567 SRIP2-201ENST00000428470 166 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.85□□□□□ -1.79
NUP88Q99567 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC3.85□□□□□ -1.79
NUP88Q99567 AC006539.3-201ENST00000454258 129 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.85□□□□□ -1.79
NUP88Q99567 AC007547.1-201ENST00000462177 490 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 HMGN2P26-201ENST00000463169 339 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 AC010401.1-201ENST00000463867 348 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 RPS4XP22-201ENST00000480755 780 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 Y_RNA.654-201ENST00000497848 106 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 AC009901.1-201ENST00000506703 541 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 AC114786.4-201ENST00000508771 728 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 RNU6-189P-201ENST00000516120 101 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 SCARNA13-201ENST00000516672 275 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 SNORA70.19-201ENST00000516717 90 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.85□□□□□ -1.79
NUP88Q99567 BTF3P12-201ENST00000519620 469 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 AC025755.1-201ENST00000521306 278 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 AL118558.2-201ENST00000556294 238 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.85□□□□□ -1.79
NUP88Q99567 HSPE1P7-201ENST00000604681 321 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.85□□□□□ -1.79
NUP88Q99567 DUXAP9-208ENST00000622815 614 ntBASIC3.85□□□□□ -1.79
NUP88Q99567 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.85□□□□□ -1.79
NUP88Q99567 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
NUP88Q99567 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
NUP88Q99567 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
NUP88Q99567 AP001148.1-201ENST00000624124 2359 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms