Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SSXP4-201ENST00000451349 245 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 RPL21P8-201ENST00000465083 535 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 RNU6-914P-201ENST00000516749 109 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AC090151.1-201ENST00000520784 730 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AL121576.1-201ENST00000556055 276 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 MYL12BP1-201ENST00000569826 507 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 MIR4286-201ENST00000580651 93 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AC136601.2-201ENST00000604356 474 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AL670379.4-201ENST00000605279 254 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 MIR15A-201ENST00000607334 83 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AC133104.2-201ENST00000615272 193 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AC103705.1-201ENST00000619013 241 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AC022336.2-201ENST00000568966 2538 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 RLIMP1-201ENST00000339626 1680 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AP001148.1-201ENST00000624124 2359 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 RNU6-379P-201ENST00000363813 104 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 Y_RNA.364-201ENST00000365532 101 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 SNORA75B-201ENST00000384053 137 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 Y_RNA.534-201ENST00000384599 112 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 RNU6-550P-201ENST00000391057 101 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 Y_RNA.645-201ENST00000391229 102 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 RPL21P65-201ENST00000406094 466 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AL603908.1-201ENST00000406098 201 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 RNU4-46P-201ENST00000410818 138 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 RNA5SP111-201ENST00000411386 101 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AC096644.2-201ENST00000429278 159 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AL592045.1-201ENST00000429867 352 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 FABP5P15-201ENST00000453566 214 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 RPL23AP62-201ENST00000463396 453 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AC128713.1-201ENST00000471495 306 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 RPS15AP34-201ENST00000487776 387 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AC008526.1-201ENST00000509149 338 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AP002404.1-201ENST00000532005 451 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 MTCO3P23-201ENST00000561363 289 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AC022655.2-201ENST00000577280 318 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 PRR13P7-201ENST00000605538 430 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AC008962.1-201ENST00000605729 304 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AL355365.1-201ENST00000616480 294 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 PLCE1P1-201ENST00000622094 305 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AL732372.2-225ENST00000642124 456 ntBASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CLIP3Q96DZ5 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 RNU1-15P-201ENST00000353977 144 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 SNORA37-201ENST00000384504 129 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 RPL21P17-201ENST00000397467 475 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AL445189.1-201ENST00000405722 338 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 RN7SKP27-201ENST00000410684 333 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 RNA5SP306-201ENST00000411087 107 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AL591704.1-201ENST00000432574 275 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AL590664.1-201ENST00000448065 339 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 Y_RNA.668-201ENST00000516233 93 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms