Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MTND3P7-201ENST00000474435 343 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AC068781.1-201ENST00000488231 618 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 RPL39P36-201ENST00000490784 156 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AC005178.1-201ENST00000508392 440 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 MTND1P22-201ENST00000510572 951 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 RNU7-193P-201ENST00000516723 65 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-232P-201ENST00000517144 64 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AP002770.2-201ENST00000543613 532 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 MIR4319-201ENST00000577285 85 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 MIR4435-1-201ENST00000582552 80 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AC090616.2-202ENST00000584248 222 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AC004223.2-201ENST00000590309 544 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 BNIP3P23-201ENST00000599655 511 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AC080013.6-201ENST00000606185 215 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 MIR6134-201ENST00000617606 109 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AL603755.1-201ENST00000619504 163 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AC078883.4-201ENST00000623218 367 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 ANKRD20A17P-201ENST00000511745 1330 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 RNU1-91P-201ENST00000364746 163 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 U8.8-201ENST00000365399 135 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 SNORD116-1-201ENST00000384335 95 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 RNU1-148P-201ENST00000384472 162 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 MIR301A-201ENST00000385261 86 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AL445529.1-201ENST00000398713 389 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 RPS4XP8-201ENST00000402039 771 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AL353621.1-201ENST00000418219 243 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AC090960.1-201ENST00000421072 306 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 CR769767.1-201ENST00000436337 346 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AL354941.1-201ENST00000438600 464 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 NEFMP1-201ENST00000443423 1006 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 PSPHP1-201ENST00000450062 261 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AC092001.1-201ENST00000453012 261 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 SNORA31.11-201ENST00000516528 139 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AP004247.1-201ENST00000531556 1289 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AC121247.2-201ENST00000604776 136 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AC245008.1-201ENST00000608123 476 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AL137847.3-201ENST00000611521 109 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 AL136313.1-201ENST00000624804 202 ntBASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.38□□□□□ -2.03
ZNF540Q8NDQ6 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC062016.1-201ENST00000355719 319 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-1280P-201ENST00000365211 107 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-769P-201ENST00000384407 104 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AL139413.1-201ENST00000421309 217 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 RAC1P6-201ENST00000423911 575 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 MTND1P20-201ENST00000430341 950 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 MTND4P32-201ENST00000437189 1237 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC004383.1-201ENST00000438135 289 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AL117351.1-201ENST00000438864 766 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 MTND4P25-201ENST00000441039 533 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 MTND2P4-201ENST00000445034 1004 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 SNORD97-201ENST00000459187 142 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 BZW1P2-201ENST00000473537 826 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 LINC00888-204ENST00000487386 421 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC139453.3-201ENST00000493276 369 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AP006587.4-201ENST00000526053 529 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AP000889.2-201ENST00000532684 490 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 MIR3126-201ENST00000577443 74 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 MIR3915-201ENST00000578518 97 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC010620.1-201ENST00000601088 1102 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 WISP1-OT1-201ENST00000602893 642 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 Z99497.2-201ENST00000603634 310 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AP000811.1-201ENST00000603803 651 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AL022161.1-201ENST00000604390 213 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-91P-201ENST00000607774 107 ntBASIC2.37□□□□□ -2.03
ZNF540Q8NDQ6 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 142.7 ms