Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL392003.1-201ENST00000434394 243 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC0.24□□□□□ -2.37
LINC00643Q86TS7 KATNBL1P3-201ENST00000443475 909 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 AC132479.1-201ENST00000449160 144 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 PRELID3BP1-201ENST00000457142 540 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 MEMO1P3-201ENST00000459811 302 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.24□□□□□ -2.37
LINC00643Q86TS7 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC0.24□□□□□ -2.37
LINC00643Q86TS7 AC022616.8-201ENST00000533569 253 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC0.24□□□□□ -2.37
LINC00643Q86TS7 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC0.24□□□□□ -2.37
LINC00643Q86TS7 MIR4303-201ENST00000581299 66 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC0.24□□□□□ -2.37
LINC00643Q86TS7 AC016542.1-201ENST00000608259 493 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 AC239803.2-201ENST00000610161 430 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 NACAP2-201ENST00000318548 624 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 RNU6-1164P-201ENST00000364428 107 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 RNU6-1065P-201ENST00000384513 106 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC0.23□□□□□ -2.37
LINC00643Q86TS7 UBE2Q2P12-201ENST00000414573 204 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 AC114482.1-201ENST00000418010 247 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 MTCYBP32-201ENST00000427945 1084 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 AC025459.1-201ENST00000504072 156 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC0.23□□□□□ -2.37
LINC00643Q86TS7 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC0.23□□□□□ -2.37
LINC00643Q86TS7 SNORA31.16-201ENST00000516773 139 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 AC090142.3-201ENST00000519012 385 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC0.23□□□□□ -2.37
LINC00643Q86TS7 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC0.23□□□□□ -2.37
LINC00643Q86TS7 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC0.23□□□□□ -2.37
LINC00643Q86TS7 ADAM3B-201ENST00000569937 840 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 MIR4429-201ENST00000580105 73 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC0.23□□□□□ -2.37
LINC00643Q86TS7 AC091152.3-201ENST00000604227 325 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 MZT1P2-201ENST00000604387 248 ntBASIC0.23□□□□□ -2.37
LINC00643Q86TS7 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC0.23□□□□□ -2.37
LINC00643Q86TS7 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 RNU6-167P-201ENST00000384292 106 ntBASIC0.22□□□□□ -2.37
LINC00643Q86TS7 RNU6-1151P-201ENST00000384684 107 ntBASIC0.22□□□□□ -2.37
LINC00643Q86TS7 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 AL031577.2-201ENST00000404133 280 ntBASIC0.22□□□□□ -2.37
LINC00643Q86TS7 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 AC018630.2-202ENST00000422992 927 ntBASIC0.22□□□□□ -2.37
LINC00643Q86TS7 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 CBX3P6-201ENST00000430257 527 ntBASIC0.22□□□□□ -2.37
LINC00643Q86TS7 MTND4P6-201ENST00000438297 472 ntBASIC0.22□□□□□ -2.37
LINC00643Q86TS7 JTBP1-201ENST00000441314 247 ntBASIC0.22□□□□□ -2.37
LINC00643Q86TS7 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 MTND2P24-201ENST00000453434 806 ntBASIC0.22□□□□□ -2.37
LINC00643Q86TS7 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 RNA5SP291-201ENST00000517222 105 ntBASIC0.22□□□□□ -2.37
LINC00643Q86TS7 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 MIR3167-201ENST00000579623 85 ntBASIC0.22□□□□□ -2.37
LINC00643Q86TS7 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 AC009950.2-201ENST00000636548 183 ntBASIC0.22□□□□□ -2.37
LINC00643Q86TS7 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.22□□□□□ -2.37
LINC00643Q86TS7 MIR222-201ENST00000384992 110 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 RPL23AP32-201ENST00000395315 459 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 NDUFS5P4-201ENST00000412983 318 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 AC114737.2-201ENST00000421583 173 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC0.21□□□□□ -2.38
LINC00643Q86TS7 UBE2V1P5-201ENST00000440070 405 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 RPL7P36-201ENST00000444633 681 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC0.21□□□□□ -2.38
LINC00643Q86TS7 BX322784.1-201ENST00000455793 1077 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 MTND1P16-201ENST00000465177 898 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 AC002350.1-201ENST00000490759 375 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 HMGN1P13-201ENST00000505795 138 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.21□□□□□ -2.38
LINC00643Q86TS7 AC004812.1-201ENST00000540773 146 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 AC087897.1-201ENST00000550134 156 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC0.21□□□□□ -2.38
LINC00643Q86TS7 MIR4444-1-201ENST00000581696 74 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 MIR4444-2-201ENST00000584390 74 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 VN1R107P-201ENST00000601784 209 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 AC104465.1-201ENST00000611365 139 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 AC004777.1-201ENST00000624317 287 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 U6.107-201ENST00000637108 79 ntBASIC0.21□□□□□ -2.38
LINC00643Q86TS7 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC0.21□□□□□ -2.38
LINC00643Q86TS7 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 SNORD114-24-201ENST00000365029 72 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 MIR19B1-201ENST00000384829 87 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 MIR508-201ENST00000384857 115 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AL109755.1-201ENST00000401791 649 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 RN7SKP284-201ENST00000411002 343 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 BEND7P1-201ENST00000422058 457 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 FO393419.3-201ENST00000428741 282 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AC007919.1-201ENST00000429380 217 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 CETN4P-201ENST00000432407 469 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AL831737.1-201ENST00000441288 271 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AL358794.1-201ENST00000445689 381 ntBASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms