Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.85□□□□□ -1.79
VPS53Q5VIR6 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS53Q5VIR6 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS53Q5VIR6 U3.12-201ENST00000364498 214 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 RNU4-66P-201ENST00000365199 138 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 SMIM11P1-201ENST00000369586 178 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 SNORA1.3-201ENST00000384676 136 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 Y_RNA.576-201ENST00000384781 102 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 TXNP7-201ENST00000406296 293 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 RNU4-46P-201ENST00000410818 138 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 MTND3P8-201ENST00000412909 339 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 CALM2P2-201ENST00000428512 440 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 AL590383.1-201ENST00000428602 75 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 AL353705.1-201ENST00000433468 480 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 IFNA20P-201ENST00000436840 528 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 BTF3P12-201ENST00000519620 469 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 AL163153.1-201ENST00000554223 283 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 RPL23AP84-201ENST00000571193 464 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 AC021646.1-201ENST00000605469 484 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 AC006111.3-201ENST00000622137 383 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS53Q5VIR6 MTND4P14-201ENST00000435799 1354 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 MTND5P1-201ENST00000445440 1375 ntBASIC3.84□□□□□ -1.79
VPS53Q5VIR6 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.84□□□□□ -1.8
VPS53Q5VIR6 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
VPS53Q5VIR6 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 Y_RNA.333-201ENST00000365274 102 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 RNU6-946P-201ENST00000383878 107 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 RNU6-1011P-201ENST00000384668 107 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 RPS4XP3-201ENST00000398541 413 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 Y_RNA.615-201ENST00000410769 117 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 RPS20P15-201ENST00000412792 311 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 AC093106.2-201ENST00000428212 385 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 NDUFB4P6-201ENST00000436819 366 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 RPL31P60-201ENST00000478450 367 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 AC104806.1-201ENST00000508720 308 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 GMPSP1-201ENST00000514075 579 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 AC112206.3-201ENST00000514578 389 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 RNA5SP217-201ENST00000515959 91 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 Y_RNA.665-201ENST00000516177 98 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 RNU7-30P-201ENST00000516835 62 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 RNU6-685P-201ENST00000517088 95 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 RNU6-840P-201ENST00000517275 65 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 OR4H12P-201ENST00000556269 907 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 AC174048.1-201ENST00000603389 144 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 AL157817.1-201ENST00000614264 790 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 uc_338.34-201ENST00000617467 174 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 AC091903.1-201ENST00000624322 454 ntBASIC3.83□□□□□ -1.8
VPS53Q5VIR6 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS53Q5VIR6 TPTE2P4-201ENST00000258589 1605 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AC093010.3-201ENST00000570269 15214 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS53Q5VIR6 RNU6-522P-201ENST00000364497 107 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 SNORA32.2-201ENST00000384049 122 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AL592114.1-201ENST00000403842 483 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 NDUFS5P1-201ENST00000405668 289 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 RPL7P46-201ENST00000425129 740 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS53Q5VIR6 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AL590639.1-201ENST00000456484 337 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AC117522.3-201ENST00000507974 584 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS53Q5VIR6 Y_RNA.675-201ENST00000516389 149 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 RN7SKP256-201ENST00000517201 314 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AC105029.1-201ENST00000520250 669 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AC068657.1-201ENST00000520807 306 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms