Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNU4-42P-201ENST00000364738 142 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 SNORD82-201ENST00000365530 70 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 RNU6-19P-201ENST00000384718 107 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 ATP6V0E1P3-201ENST00000420036 246 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 OFD1P18Y-201ENST00000420889 959 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AC092628.1-201ENST00000436250 252 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AC004383.1-201ENST00000438135 289 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC0.6□□□□□ -2.31
CHD9Q3L8U1 MTCYBP27-201ENST00000555160 670 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AL078605.1-201ENST00000603529 500 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AL355297.2-201ENST00000604792 129 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AC009318.4-201ENST00000620496 486 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 uc_338.22-201ENST00000622722 187 ntBASIC0.6□□□□□ -2.31
CHD9Q3L8U1 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.59□□□□□ -2.31
CHD9Q3L8U1 AL365496.1-201ENST00000426885 215 ntBASIC0.59□□□□□ -2.31
CHD9Q3L8U1 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC0.59□□□□□ -2.31
CHD9Q3L8U1 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC0.59□□□□□ -2.31
CHD9Q3L8U1 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC0.59□□□□□ -2.31
CHD9Q3L8U1 RNU7-26P-201ENST00000458980 63 ntBASIC0.59□□□□□ -2.31
CHD9Q3L8U1 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC0.59□□□□□ -2.31
CHD9Q3L8U1 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
CHD9Q3L8U1 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC0.59□□□□□ -2.31
CHD9Q3L8U1 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC0.59□□□□□ -2.31
CHD9Q3L8U1 AL592148.2-201ENST00000612210 372 ntBASIC0.59□□□□□ -2.31
CHD9Q3L8U1 AP003485.1-201ENST00000625093 753 ntBASIC0.59□□□□□ -2.31
CHD9Q3L8U1 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC0.59□□□□□ -2.31
CHD9Q3L8U1 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.59□□□□□ -2.31
CHD9Q3L8U1 CR848007.1-201ENST00000442354 1699 ntBASIC0.59□□□□□ -2.31
CHD9Q3L8U1 ZNF736P3Y-201ENST00000428264 1465 ntBASIC0.59□□□□□ -2.31
CHD9Q3L8U1 RNU6-339P-201ENST00000384310 107 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 RNU6-31P-201ENST00000384388 108 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 MIR147B-201ENST00000390185 80 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AC118469.1-201ENST00000442943 488 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 BLNK-209ENST00000495266 440 ntTSL 5 BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AL009028.1-201ENST00000604895 802 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 DUSP12P1-201ENST00000612874 516 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AC104763.3-201ENST00000613765 618 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 LINC02211-204ENST00000642024 1070 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 RNU6-452P-201ENST00000384406 107 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 MIR325-201ENST00000385260 98 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 RNU2-49P-201ENST00000410666 184 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 MTCO1P53-201ENST00000441633 699 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 ANKRD26P4-201ENST00000455755 950 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 PNPLA4P1-201ENST00000458328 305 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AC078857.1-201ENST00000469870 667 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 RNU6-1095P-201ENST00000516148 108 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 RNA5SP285-201ENST00000516619 119 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.59□□□□□ -2.32
CHD9Q3L8U1 MIR4802-201ENST00000581881 80 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AC022387.2-201ENST00000604050 448 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 AC010738.1-201ENST00000604970 987 ntBASIC0.59□□□□□ -2.32
CHD9Q3L8U1 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 RNU6-272P-201ENST00000411028 104 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 EDDM3CP-201ENST00000415977 425 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 EIF4EP4-201ENST00000424916 578 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 TOMM22P2-201ENST00000430735 237 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 RNU6-420P-201ENST00000458780 107 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 KLF3P2-201ENST00000465138 268 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 AC098591.2-201ENST00000510152 315 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 AC093770.1-201ENST00000511559 571 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 AC117525.1-201ENST00000515228 503 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 HAUS1P3-201ENST00000523909 662 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 AL138963.2-201ENST00000605137 226 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 FAM157A-202ENST00000615155 405 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 MTND5P31-201ENST00000419366 1374 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 AL359854.1-201ENST00000614203 1594 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 snoU109.1-201ENST00000459339 135 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 RNU6-970P-201ENST00000516312 107 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 AL356585.4-201ENST00000623078 1229 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 AC109454.4-201ENST00000623411 649 ntBASIC0.58□□□□□ -2.32
CHD9Q3L8U1 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
CHD9Q3L8U1 CBX3P1-201ENST00000325243 554 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 RNU6-1164P-201ENST00000364428 107 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 U3.20-201ENST00000390909 217 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 AL512604.1-201ENST00000404812 257 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms